View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1584_low_19 (Length: 255)
Name: NF1584_low_19
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 8134094 - 8134019
Alignment:
| Q |
6 |
caaaggaaataaaggtccattcgattgtgacacttccaccgaagacctccccaccatgactccatgactcatcacc |
81 |
Q |
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| T |
8134094 |
caaaggaaataaaggtccattcgattgtgacacttccaccgaagacctccccaccatgcctccatgactcatcacc |
8134019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 8133949 - 8133850
Alignment:
| Q |
149 |
aaagataaattcttctaagattaaaacctcgtggtttaaaaac------tatgtctctatgagtttaactcacttgataatggataatgcataatttatg |
242 |
Q |
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| T |
8133949 |
aaagataaattcttctaagattaaaacctcatggtttaaaaacttgaaatatgtccctatgagcttagctcacttgataatggataatgcataatttatg |
8133850 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 11661261 - 11661220
Alignment:
| Q |
200 |
tatgagtttaactcacttgataatggataatgcataatttat |
241 |
Q |
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| T |
11661261 |
tatgagtttagctcacttgataagggataatgcataatttat |
11661220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 54457153 - 54457193
Alignment:
| Q |
202 |
tgagtttaactcacttgataatggataatgcataatttatg |
242 |
Q |
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| T |
54457153 |
tgagcttaactcacttgataagagataatgcataatttatg |
54457193 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 5641779 - 5641744
Alignment:
| Q |
207 |
ttaactcacttgataatggataatgcataatttatg |
242 |
Q |
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| T |
5641779 |
ttaactcacttggtaatggataatgcataatttatg |
5641744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 7929171 - 7929129
Alignment:
| Q |
200 |
tatgagtttaactcacttgataatggataatgcataatttatg |
242 |
Q |
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| T |
7929171 |
tatgagtttaactcacttgataagggataatacataatatatg |
7929129 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 31154342 - 31154300
Alignment:
| Q |
201 |
atgagtttaactcacttgataatggataatgcataatttatga |
243 |
Q |
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| T |
31154342 |
atgagtttagctcacttgataacggataatacataatttatga |
31154300 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 24253739 - 24253698
Alignment:
| Q |
201 |
atgagtttaactcacttgataatggataatgcataatttatg |
242 |
Q |
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||||| ||| |||||||||||| ||||||||||||||||||| |
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| T |
24253739 |
atgagcttagctcacttgataagggataatgcataatttatg |
24253698 |
T |
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