View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1584_low_20 (Length: 254)
Name: NF1584_low_20
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_low_20 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 1248839 - 1249083
Alignment:
| Q |
10 |
aagaatatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctac |
109 |
Q |
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| T |
1248839 |
aagaaaatcccaaaaacaacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccccactcattgctgacctac |
1248938 |
T |
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| Q |
110 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
209 |
Q |
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| T |
1248939 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
1249038 |
T |
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| Q |
210 |
ctggaacagcctaaccggtcctatccccgattactttagcaagct |
254 |
Q |
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| T |
1249039 |
ctggaacagcctaaccggtcctatccctgattactttagcaagct |
1249083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 12079787 - 12079546
Alignment:
| Q |
10 |
aagaatatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctac |
109 |
Q |
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| T |
12079787 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggtgctgatgatcttgtcggtacaataccgccactcatcgccgatctac |
12079688 |
T |
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| Q |
110 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
209 |
Q |
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| T |
12079687 |
cttacctcgagaccctcattttacgcctcctacctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaa |
12079588 |
T |
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| Q |
210 |
ctggaacagcctaaccggtcctatccccgattactttagcaa |
251 |
Q |
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| T |
12079587 |
ttggaacaacctaactggtcctatccctgattactttagcaa |
12079546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 12096427 - 12096186
Alignment:
| Q |
10 |
aagaatatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctac |
109 |
Q |
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||||| ||||||||||| || ||| | |||||||||||||| ||||| || || |||||||| || |||||||| || || |||||||| || || |||| |
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| T |
12096427 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgccactcatcgccgatctac |
12096328 |
T |
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| Q |
110 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
209 |
Q |
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| T |
12096327 |
cttacctcgagaccctcatttttcgcctcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaa |
12096228 |
T |
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| Q |
210 |
ctggaacagcctaaccggtcctatccccgattactttagcaa |
251 |
Q |
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||||||| |||||| ||||||||||| |||||||||||||| |
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| T |
12096227 |
ttggaacaacctaactggtcctatccctgattactttagcaa |
12096186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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