View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1584_low_22 (Length: 248)
Name: NF1584_low_22
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_low_22 |
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| [»] scaffold1452 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 43947512 - 43947747
Alignment:
| Q |
1 |
tgggatttagccttttgtggacccttaactaaattagatatgtgcacaacaagtttagtcaacaatataaggcaacaattggagctgattttgtcactaa |
100 |
Q |
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| T |
43947512 |
tgggatttagccttttgtggacccttaactaaattagatatgtgcacaacaagtttagtcaacaatataaggcaacaattggagctgattttgtcactaa |
43947611 |
T |
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| Q |
101 |
agaacttcaaattgacgacagactcgtcactctacaagtgggtttcttatttcaatgctatttctgcatgcttttgttttttctgttcttggaatgttgt |
200 |
Q |
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| T |
43947612 |
agaacttcaaattgacgacagactcgtcactctacaagtgggtttcttatttcaatgctatttctgcatgcttttgttttttctgttcttggaatgttgt |
43947711 |
T |
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| Q |
201 |
gaaaagtttgtttatttaagtgggattgtatgatat |
236 |
Q |
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| T |
43947712 |
gaaaagtttgtttatttaagtgggattgtatgatat |
43947747 |
T |
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Target: scaffold1452 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1452
Description:
Target: scaffold1452; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 791 - 681
Alignment:
| Q |
35 |
tagatatgtgcacaacaagtttagtcaacaatataaggcaacaattggagctgattttgtcactaaagaacttcaaattgacgacagactcgtcactcta |
134 |
Q |
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| T |
791 |
tagatatgtgcacaagaagttcagtcagcaatataaagctacaatcggtgctgactttgtcaccaaagaattgcagatcgatgaccgactagtgactcta |
692 |
T |
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| Q |
135 |
caagtgggttt |
145 |
Q |
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| T |
691 |
caagtgggttt |
681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 16139157 - 16139238
Alignment:
| Q |
35 |
tagatatgtgcacaacaagtttagtcaacaatataaggcaacaattggagctgattttgtcactaaagaacttcaaattgac |
116 |
Q |
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| T |
16139157 |
tagatatgtgcacaagaagtttagtcaccgatataaagctacaatcggtgctggttctgtccctagtgaactgcaaattgac |
16139238 |
T |
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