View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1584_low_23 (Length: 248)

Name: NF1584_low_23
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1584_low_23
NF1584_low_23
[»] chr5 (14 HSPs)
chr5 (1-238)||(8644423-8644660)
chr5 (1-238)||(8678025-8678262)
chr5 (1-238)||(8637078-8637315)
chr5 (63-175)||(1600018-1600130)
chr5 (64-176)||(9074443-9074555)
chr5 (63-176)||(8529213-8529326)
chr5 (66-176)||(8547823-8547933)
chr5 (63-238)||(8641656-8641822)
chr5 (63-116)||(2904783-2904836)
chr5 (35-116)||(2844840-2844924)
chr5 (35-116)||(2856667-2856751)
chr5 (35-116)||(2874277-2874361)
chr5 (201-242)||(2856547-2856588)
chr5 (201-238)||(2874161-2874198)
[»] chr7 (2 HSPs)
chr7 (2-176)||(48361569-48361746)
chr7 (63-176)||(35780089-35780202)
[»] chr4 (1 HSPs)
chr4 (63-176)||(9443374-9443487)
[»] scaffold0627 (1 HSPs)
scaffold0627 (61-175)||(4942-5054)
[»] chr6 (1 HSPs)
chr6 (61-175)||(16716641-16716755)
[»] chr1 (1 HSPs)
chr1 (63-113)||(5131043-5131093)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8644423 - 8644660
Alignment:
Q  1 cttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatgattgcaacctctcactttcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8644423 cttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatgattgcaacctctcactttcaa 8644522  T
Q  101 aacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggataatgaagattcaaacctgatccaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8644523 aacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggataatgaagactcaaacctgatccaat 8644622  T
Q  201 agaaatttgaggatctacttcagcatttctccatgatg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8644623 agaaatttgaggatctacttcagcatttctccatgatg 8644660  T

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Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8678025 - 8678262
Alignment:
Q  1 cttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatgattgcaacctctcactttcta 100  Q
    ||||||| ||||||| ||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||    
T  8678025 cttaattttcccatgtgaatacgcttgttacaacgaaatccattattatgattttgaaatactggaggagaaggaaatgattgcaacttctcagtttcta 8678124  T
Q  101 aacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggataatgaagattcaaacctgatccaat 200  Q
    |||||||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||| | ||||||||||| | ||  ||||| ||||||||||    
T  8678125 aacagaaacacaatatagacatttcttgaccctcaaatccgatccaatgaagcgcaccattaatacaagtgggataacggagcctcaaatctgatccaat 8678224  T
Q  201 agaaatttgaggatctacttcagcatttctccatgatg 238  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  8678225 agaaatttgaggatccacttcagcatttctccatgatg 8678262  T

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Target: chr5; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8637078 - 8637315
Alignment:
Q  1 cttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacactggaggagaaggaaatgattgcaacctctcactttcta 100  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  8637078 cttaattctccaatgcgaatacactcgttatgacgaaatccattattttgattttgtaacactggaggagaaggaaatgattgcaacctctcattttcta 8637177  T
Q  101 aacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggataatgaagattcaaacctgatccaat 200  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||||| || |||||| ||| ||||||||||| ||||    | |  |||||||||    
T  8637178 aacagaaacacaatatagacctttcttgacccttaaatctgatccaatgaatcgtaccattcacacaagtgggataacgaagccatatatttgatccaat 8637277  T
Q  201 agaaatttgaggatctacttcagcatttctccatgatg 238  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  8637278 agaaatttggggatccacttcagcatttctccatgatg 8637315  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 1600130 - 1600018
Alignment:
Q  63 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta 162  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||  |||||| ||| |||  ||| ||||| |||| ||||||||||| ||||||||     
T  1600130 tggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaccaatattgacatttgctcaccctcatatcttatccaatgaagtgcaccattc 1600031  T
Q  163 acataagtgggat 175  Q
    ||| |||||||||    
T  1600030 acacaagtgggat 1600018  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 9074555 - 9074443
Alignment:
Q  64 ggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaa 163  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||  | ||  ||| |||| ||||||||||| |||||||| |    
T  9074555 ggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaacaatattgacctttgctgattttcatatcttatccaatgaagtgcaccattca 9074456  T
Q  164 cataagtgggata 176  Q
    || ||||||||||    
T  9074455 cacaagtgggata 9074443  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 8529213 - 8529326
Alignment:
Q  63 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta 162  Q
    ||||||||||||||| || |||||||||||| |||| || ||||||  |||||| |||||||  | | |||||||||| ||||||||||| ||||||||     
T  8529213 tggaggagaaggaaacgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattc 8529312  T
Q  163 acataagtgggata 176  Q
    ||| ||||||||||    
T  8529313 acacaagtgggata 8529326  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 8547933 - 8547823
Alignment:
Q  66 aggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaaca 165  Q
    |||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||| | |    |||| ||||| |||||||||||| |||| ||| |||    
T  8547933 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 8547834  T
Q  166 taagtgggata 176  Q
     ||||||||||    
T  8547833 caagtgggata 8547823  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 8641656 - 8641822
Alignment:
Q  63 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta 162  Q
    |||||||||||||||| | | ||| ||||||||||| ||||||||||| ||||| |||||||  ||  |||||||| |||| ||||||||  ||| |||     
T  8641656 tggaggagaaggaaataacttcaatctctcactttccaaacagaaacataatattgacctttgctccccctcaaatttgattcaatgaagaacactattc 8641755  T
Q  163 acataagtgggataatgaagattcaaacctgatccaatagaaatttgaggatctacttcagcatttctccatgatg 238  Q
    ||| |||||||||| | |||| || |         ||||||||| |||||||| |||||| |||||||||||||||    
T  8641756 acacaagtgggatacttaagactcga---------aatagaaatctgaggatccacttcaacatttctccatgatg 8641822  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 2904836 - 2904783
Alignment:
Q  63 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatat 116  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  2904836 tggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatat 2904783  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 2844924 - 2844840
Alignment:
Q  35 gaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatat 116  Q
    ||||||||||||  ||||||  ||||||   ||||||||||||||| || ||||||||||||||||| |||  ||||||||||||    
T  2844924 gaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatat 2844840  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 2856751 - 2856667
Alignment:
Q  35 gaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatat 116  Q
    ||||||||||||  ||||||  ||||||   ||||||||||||||| || ||||||||||||||||| |||  ||||||||||||    
T  2856751 gaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatat 2856667  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 2874361 - 2874277
Alignment:
Q  35 gaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatat 116  Q
    ||||||||||||  ||||||  ||||||   ||||||||||||||| || ||||||||||||||||| |||  ||||||||||||    
T  2874361 gaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatat 2874277  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 2856588 - 2856547
Alignment:
Q  201 agaaatttgaggatctacttcagcatttctccatgatgatgt 242  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  2856588 agaaatttgaggatccacttcaacatttctccatgatgatgt 2856547  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 2874198 - 2874161
Alignment:
Q  201 agaaatttgaggatctacttcagcatttctccatgatg 238  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  2874198 agaaatttgaggatccacttcaacatttctccatgatg 2874161  T

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Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 48361746 - 48361569
Alignment:
Q  2 ttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaacctctcactttc 98  Q
    ||||||||||||||| |||| ||  ||||| | ||| ||||||||| ||||||  ||||||   |||||||||||||||||| |||| ||||||||||||    
T  48361746 ttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatgactgcaccctctcactttc 48361647  T
Q  99 taaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggata 176  Q
     ||||||||| ||||||| |||||||  | | |||||||||| ||||||||||| |||||||| ||| ||||||||||    
T  48361646 aaaacagaaaaacaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggata 48361569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 35780089 - 35780202
Alignment:
Q  63 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta 162  Q
    |||||||||||||||||  ||||||||||||| ||| ||||| ||||| ||||| ||| ||| ||   |||||||| ||||||| |||||| |||||||     
T  35780089 tggaggagaaggaaatggctgcaacctctcaccttcaaaacaaaaacataatattgacttttgttgcccctcaaatttgatccagtgaagcacaccattc 35780188  T
Q  163 acataagtgggata 176  Q
    ||| ||||||||||    
T  35780189 acacaagtgggata 35780202  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 9443374 - 9443487
Alignment:
Q  63 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta 162  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||  |||||| |||||||  |||||||||||||| ||||||||||| ||||||||     
T  9443374 tggaggagaaggaaatgactgcaacctctcactttcaaagcagaaaaccaatattgacctttgctcatcctcaaatcttatccaatgaagtgcaccattc 9443473  T
Q  163 acataagtgggata 176  Q
    ||| ||||||||||    
T  9443474 acacaagtgggata 9443487  T

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Target: scaffold0627 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 4942 - 5054
Alignment:
Q  61 actggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccat 160  Q
    ||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||||  ||| |||| |   |||||||||||||||||||||| |||||||    
T  4942 actgggggagagggaaatgattgcaacctctcactgtcaaaacaaaaacacaata--gacgtttcctttccctcaaatctgatccaatgaagtgcaccat 5039  T
Q  161 taacataagtgggat 175  Q
    | ||| |||||||||    
T  5040 tcacacaagtgggat 5054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 16716641 - 16716755
Alignment:
Q  61 actggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccat 160  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||| ||||||||||||||| ||||     |||||||| ||| ||||||||| |||||||    
T  16716641 actgggggagaaggaaatgaatgcaacttctcactttcaaaacaaaaacacaatatagacatttcccttccctcaaatgtgaaccaatgaagtgcaccat 16716740  T
Q  161 taacataagtgggat 175  Q
    | ||| |||||||||    
T  16716741 tcacacaagtgggat 16716755  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 5131043 - 5131093
Alignment:
Q  63 tggaggagaaggaaatgattgcaacctctcactttctaaacagaaacacaa 113  Q
    |||||||||||| ||||||||||| ||||||||||| |||| |||||||||    
T  5131043 tggaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaa 5131093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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