View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1584_low_27 (Length: 234)
Name: NF1584_low_27
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_low_27 |
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| [»] scaffold1808 (1 HSPs) |
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| [»] scaffold0674 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 14277687 - 14277475
Alignment:
| Q |
9 |
tttcaaaatctagcaattgtataggtctccaaatttatggcgacaatggattcaaggagatattccctgtgatatgttgagaataccacctccaaagaca |
108 |
Q |
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||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14277687 |
tttcaaattctatcaattttataggtctccaaatttagggcgacaatggattcaaggagatattccctgggatatgttgagaataccacctccaaagaca |
14277588 |
T |
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| Q |
109 |
tttttagtggattactatgagtatactgatttggatgaattgaaaccaggagatcttattgagattcaaaagagaagaaggataggattccctatttgtg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14277587 |
tttttagtggattactatgagtatactgatttggatgaattgaaaccaggtgatcttattgagattcaaaagagaagaaggataggattccctatttgtg |
14277488 |
T |
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| Q |
209 |
gtaagtggtaact |
221 |
Q |
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||||||||||||| |
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| T |
14277487 |
gtaagtggtaact |
14277475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1808 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold1808
Description:
Target: scaffold1808; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 213 - 416
Alignment:
| Q |
9 |
tttcaaaatctagcaattgtataggtctccaaatttatggcgacaatggattcaaggagatattccctgtgatatgttgagaataccacctccaaagaca |
108 |
Q |
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||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
213 |
tttcaaattctatcaattttataggtctccaaatttagggcgacaatggattcaaggagatattccctgggatatgttgagaatgccacctccaaagaca |
312 |
T |
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| Q |
109 |
tttttagtggattactatgagtatactgatttggatgaattgaaaccaggagatcttattgagattcaaaagagaagaaggataggattccctatttgtg |
208 |
Q |
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| T |
313 |
tttttagtggattattatgagtatactgatttggatgaattgaaaccaggagatcttattgaaattcaaaatagaagaaggataggattccctatttgtg |
412 |
T |
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| Q |
209 |
gtaa |
212 |
Q |
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|||| |
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| T |
413 |
gtaa |
416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0674 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0674
Description:
Target: scaffold0674; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 3546 - 3343
Alignment:
| Q |
9 |
tttcaaaatctagcaattgtataggtctccaaatttatggcgacaatggattcaaggagatattccctgtgatatgttgagaataccacctccaaagaca |
108 |
Q |
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||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
3546 |
tttcaaattctatcaattttataggtctccaaatttagggcgacaatggattcaaggagatattccctgggatatgttgagaatgccacctccaaagaca |
3447 |
T |
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| Q |
109 |
tttttagtggattactatgagtatactgatttggatgaattgaaaccaggagatcttattgagattcaaaagagaagaaggataggattccctatttgtg |
208 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
3446 |
tttttagtggattattatgagtatactgatttggatgaattgaaaccaggagatcttattgaaattcaaaatagaagaaggataggattccctatttgtg |
3347 |
T |
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| Q |
209 |
gtaa |
212 |
Q |
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|||| |
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| T |
3346 |
gtaa |
3343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 65 - 212
Target Start/End: Complemental strand, 35130920 - 35130773
Alignment:
| Q |
65 |
gagatattccctgtgatatgttgagaataccacctccaaagacatttttagtggattactatgagtatactgatttggatgaattgaaaccaggagatct |
164 |
Q |
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|||||||| |||| |||||||||||||| ||||| |||||||| | |||||||||||| |||||||||| ||| || || | |||||||||||||||| |
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| T |
35130920 |
gagatatttcctgggatatgttgagaatgccaccgccaaagacttatttagtggattattatgagtataacgatctgaataatttgaaaccaggagatca |
35130821 |
T |
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| Q |
165 |
tattgagattcaaaagagaagaaggataggattccctatttgtggtaa |
212 |
Q |
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||| ||||||||||||||| | |||| | ||||||||||| |||||| |
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| T |
35130820 |
tatcgagattcaaaagagagggaggagattattccctatttatggtaa |
35130773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 212
Target Start/End: Complemental strand, 35138199 - 35138052
Alignment:
| Q |
65 |
gagatattccctgtgatatgttgagaataccacctccaaagacatttttagtggattactatgagtatactgatttggatgaattgaaaccaggagatct |
164 |
Q |
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||||||||||||| |||||||||| || ||||| |||||||| | ||||||||||| |||||||||| ||| || || | ||||||||||||||| |
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| T |
35138199 |
gagatattccctggaatatgttgaggatgccaccaccaaagacttacttagtggattattatgagtataacgatctgaataatttgaaaccaggagatta |
35138100 |
T |
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| Q |
165 |
tattgagattcaaaagagaagaaggataggattccctatttgtggtaa |
212 |
Q |
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||| |||||||||| ||| |||||| || ||||||| ||| |||||| |
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| T |
35138099 |
tatcgagattcaaactagaggaaggaaagcattccctctttatggtaa |
35138052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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