View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1584_low_29 (Length: 219)
Name: NF1584_low_29
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_low_29 |
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| [»] chr5 (10 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0627 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 8644145 - 8644347
Alignment:
| Q |
17 |
aagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctc |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8644145 |
aagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctc |
8644244 |
T |
|
| Q |
117 |
ttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgat |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
8644245 |
ttcaaagttttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgatcaaagtatcaatgttgtaaaccttagtccatgat |
8644344 |
T |
|
| Q |
217 |
tct |
219 |
Q |
| |
|
||| |
|
|
| T |
8644345 |
tct |
8644347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 8636800 - 8637002
Alignment:
| Q |
17 |
aagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctc |
116 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8636800 |
aagaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctc |
8636899 |
T |
|
| Q |
117 |
ttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgat |
216 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
8636900 |
ttcaaagtgttttaccggccatcatataccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcgatgttgtaaaccttagtccatgat |
8636999 |
T |
|
| Q |
217 |
tct |
219 |
Q |
| |
|
||| |
|
|
| T |
8637000 |
tct |
8637002 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 8677738 - 8677949
Alignment:
| Q |
17 |
aagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8677738 |
aagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccctc |
8677837 |
T |
|
| Q |
117 |
ttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggact---------gaccaaagtatcaatcttgtaaacctta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| | ||||||| |||||||||||| |
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|
| T |
8677838 |
ttcaaagtgttttaccggccaacataaaccataatgccgcgaatcaggtctgcccaaaggactgacaggacggaccacaatatcaatgttgtaaacctta |
8677937 |
T |
|
| Q |
208 |
gtccatgattct |
219 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8677938 |
gtccatgattct |
8677949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 8535442 - 8535636
Alignment:
| Q |
25 |
ccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagt |
124 |
Q |
| |
|
|||| |||||||||||||| ||| ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
8535442 |
ccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagt |
8535541 |
T |
|
| Q |
125 |
gttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattct |
219 |
Q |
| |
|
|||||| ||||| | ||||||||| | | | | | || | || || ||||| ||| |||||||||| ||||||| |||||||||||||||| |
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|
| T |
8535542 |
gttttattggccagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagtatcaatgttgtaaatcttagtccatgattct |
8535636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 9074882 - 9074773
Alignment:
| Q |
28 |
tgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtt |
127 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||||| |||||| ||||||| || |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
9074882 |
tgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgtt |
9074783 |
T |
|
| Q |
128 |
ttaccggcca |
137 |
Q |
| |
|
||| |||||| |
|
|
| T |
9074782 |
ttatcggcca |
9074773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 8528890 - 8529013
Alignment:
| Q |
28 |
tgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtt |
127 |
Q |
| |
|
|||||||||||||||||||| ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
8528890 |
tgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgtt |
8528989 |
T |
|
| Q |
128 |
ttaccggccaacataaaccataac |
151 |
Q |
| |
|
||| |||||| | ||||||||||| |
|
|
| T |
8528990 |
ttatcggccagcttaaaccataac |
8529013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 8641341 - 8641432
Alignment:
| Q |
59 |
cgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataac |
151 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||| ||||| || |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
8641341 |
cgggttcatagtagataa-acaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaacatacaccataac |
8641432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 9003411 - 9003598
Alignment:
| Q |
25 |
ccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagt |
124 |
Q |
| |
|
||||||| | |||||||| |||| |||||||||||||||||||||||| | ||||||| | || | ||| ||||||||| ||| | ||||||||| |
|
|
| T |
9003411 |
ccgtgaacttgaaaaactctgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaaca |
9003510 |
T |
|
| Q |
125 |
gttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtcca |
212 |
Q |
| |
|
|||||||||||||||| |||||| | | | | |||||| |||||||||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
9003511 |
gttttaccggccaacaaaaaccactagacggatattcaggtatgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtcca |
9003598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 8548264 - 8548128
Alignment:
| Q |
17 |
aagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctc |
116 |
Q |
| |
|
|||||| ||| |||||||||||| |||||| ||| ||| ||||| | |||||| ||| ||||| | |||||||||||||||| |||||| ||||| |
|
|
| T |
8548264 |
aagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctc |
8548165 |
T |
|
| Q |
117 |
ttcaaagtgttttaccggccaacataaaccataacgc |
153 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||| |||| |
|
|
| T |
8548164 |
ttcaaagtgttttaccggcaaacacaaagcatgacgc |
8548128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 1600380 - 1600336
Alignment:
| Q |
93 |
atataacaatatggcagccccctcttcaaagtgttttaccggcca |
137 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| || |||||| |
|
|
| T |
1600380 |
atataacaatatggcagcaccttcttcaaagtgttgtatcggcca |
1600336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 9443051 - 9443174
Alignment:
| Q |
28 |
tgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtt |
127 |
Q |
| |
|
|||||||||||||||||||| ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
9443051 |
tgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaagtgtt |
9443150 |
T |
|
| Q |
128 |
ttaccggccaacataaaccataac |
151 |
Q |
| |
|
||| |||||| | ||||||||||| |
|
|
| T |
9443151 |
ttatcggccagcttaaaccataac |
9443174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 35779782 - 35779963
Alignment:
| Q |
29 |
gaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttt |
128 |
Q |
| |
|
||||||||||||||||| | ||| |||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
35779782 |
gaattcgaaaaactttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca---------tcaaagggttt |
35779872 |
T |
|
| Q |
129 |
taccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattct |
219 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||| ||| | || | ||||| |||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
35779873 |
taccggccaacataaaccataacgcggtgaaataggatagcctagagaattgaccgaagtctcaatgttgtaaaccttagtccacgattct |
35779963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 48361953 - 48361902
Alignment:
| Q |
86 |
aggaatgatataacaatatggcagccccctcttcaaagtgttttaccggcca |
137 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
48361953 |
aggaatgatataacaatatggcagcaccttcttcaaagtgttttatcggcca |
48361902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 5130750 - 5130876
Alignment:
| Q |
28 |
tgaattcgaaaaactttgaaagcatgtttctcgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgt |
126 |
Q |
| |
|
|||||||||||||||||| | || |||||| ||||||| ||| || || ||| |||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
5130750 |
tgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgt |
5130849 |
T |
|
| Q |
127 |
tttaccggcc---aacataaaccataa |
150 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
5130850 |
tttaccggccaaaaacataaaccataa |
5130876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 16716363 - 16716409
Alignment:
| Q |
88 |
gaatgatataacaatatggcagccccctcttcaaagtgttttaccgg |
134 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
16716363 |
gaatgatataacaatacgccagcaccctcttcaaagtgttttaccgg |
16716409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 4663 - 4709
Alignment:
| Q |
88 |
gaatgatataacaatatggcagccccctcttcaaagtgttttaccgg |
134 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4663 |
gaatgatgtaacaatacagcagcaccctcttcaaagtgttttaccgg |
4709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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