View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1584_low_3 (Length: 434)

Name: NF1584_low_3
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1584_low_3
NF1584_low_3
[»] chr5 (6 HSPs)
chr5 (52-426)||(20478338-20478711)
chr5 (215-301)||(14011409-14011496)
chr5 (253-373)||(8920101-8920220)
chr5 (219-281)||(42509720-42509782)
chr5 (216-277)||(31748454-31748515)
chr5 (289-373)||(21922110-21922193)
[»] scaffold0085 (1 HSPs)
scaffold0085 (212-305)||(22742-22835)
[»] chr6 (6 HSPs)
chr6 (214-319)||(21418248-21418353)
chr6 (214-301)||(21467933-21468020)
chr6 (235-373)||(34441975-34442111)
chr6 (215-302)||(21388309-21388396)
chr6 (250-282)||(21418410-21418442)
chr6 (250-282)||(21468093-21468125)
[»] scaffold0160 (1 HSPs)
scaffold0160 (230-317)||(26499-26586)
[»] chr4 (6 HSPs)
chr4 (232-305)||(1840668-1840741)
chr4 (215-277)||(39158223-39158285)
chr4 (217-373)||(42062525-42062680)
chr4 (215-305)||(18316027-18316117)
chr4 (255-304)||(7209375-7209424)
chr4 (286-358)||(31641528-31641599)
[»] chr7 (6 HSPs)
chr7 (215-303)||(49103480-49103568)
chr7 (215-305)||(28249461-28249551)
chr7 (215-280)||(31487306-31487371)
chr7 (261-373)||(47448849-47448960)
chr7 (318-358)||(2469729-2469769)
chr7 (377-413)||(10614399-10614435)
[»] chr2 (7 HSPs)
chr2 (219-305)||(1040307-1040391)
chr2 (215-358)||(6511448-6511590)
chr2 (255-373)||(9194452-9194570)
chr2 (253-358)||(6646861-6646965)
chr2 (253-305)||(40443139-40443191)
chr2 (253-305)||(40504316-40504368)
chr2 (253-305)||(44018330-44018382)
[»] chr8 (5 HSPs)
chr8 (215-354)||(35153057-35153197)
chr8 (250-335)||(7612921-7613005)
chr8 (253-373)||(3946263-3946382)
chr8 (242-300)||(5849486-5849544)
chr8 (253-357)||(37657028-37657131)
[»] chr1 (3 HSPs)
chr1 (215-277)||(47642498-47642560)
chr1 (251-297)||(45008091-45008137)
chr1 (253-358)||(45065831-45065935)
[»] chr3 (4 HSPs)
chr3 (242-305)||(34307459-34307522)
chr3 (215-305)||(4494128-4494218)
chr3 (253-305)||(48346916-48346968)
chr3 (377-413)||(51764729-51764765)
[»] scaffold0034 (1 HSPs)
scaffold0034 (218-279)||(22694-22755)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 52 - 426
Target Start/End: Complemental strand, 20478711 - 20478338
Alignment:
Q  52 caactgtctatggcagttgcggttgttaaataaccgcattctcgccatggcgccaccatttaacaacactgcaaccaactgtttgcattacagtgtagat 151  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20478711 caactgtttatggcagttgcggttgttaaataaccgcattcccgccatggtgccaccatttaacaacactgcaaccaactgtttgcattacagtgtagat 20478612  T
Q  152 tatataaaactatcacaatattattaagggaattgtcattcacaggctaatgatttaaaaagaaatgttattcgaaaaaccactttttgagacaactcat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||| ||    
T  20478611 tatataaaactatcacaatattattaagggaattgtcattcacaggctaatgagttaaaacgaaatgttattcgaaaaaccactttttgaaacaacttat 20478512  T
Q  252 tggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagt 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| | |||||||||||||    
T  20478511 tggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaatgaagaaag-aaagtaagaatacaaagtgattatgagagagaaagt 20478413  T
Q  352 tgtcacagaggttgtcataaaaggttgagttaatgcacatttgtaacttgacatttaaaaaacatatatattctt 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  20478412 tgtcacagaggttgtcataaaaggttgagttaatgcacatttgtaacttgacatttaaaaaaaaaatatattctt 20478338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 14011496 - 14011409
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggac-aaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaa 301  Q
    ||||||||| ||| ||||||||||  ||||||||| || ||| |||||||||||||||| |||| ||| || ||||||||||||||||    
T  14011496 aatgttatttgaacaaccacttttgaagacaactcttttgaccaaccaaaatatacaaaaaaatataaagattgacacaaaaaccaaa 14011409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 373
Target Start/End: Complemental strand, 8920220 - 8920101
Alignment:
Q  253 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagtt 352  Q
    |||||||||||||||| |||||||||| |    || |||||||||||||||||   ||| |||||| | ||||||  | |||| | ||||||||||||||    
T  8920220 ggacaaccaaaatatagaaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagagaaaa-tgagaatatgatgtgagtatgagagagaaagtt 8920122  T
Q  353 gtcacagaggttgtcataaaa 373  Q
    |||||| | ||||||| ||||    
T  8920121 gtcacaaaagttgtcacaaaa 8920101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 42509782 - 42509720
Alignment:
Q  219 ttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaa 281  Q
    ||||| ||| || ||||| |||||| |||| ||| |||||||||||||| |||||||||||||    
T  42509782 ttatttgaacaatcacttgttgagagaacttattagacaaccaaaatatgcaaagaaatgtaa 42509720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 31748515 - 31748454
Alignment:
Q  216 atgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaat 277  Q
    |||||||| ||| || || |||||| ||||||| ||||||||| |||| |||||||||||||    
T  31748515 atgttatttgaacaatcattttttgtgacaacttattggacaatcaaattatacaaagaaat 31748454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 21922110 - 21922193
Alignment:
Q  289 cacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagttgtcacagaggttgtcataaaa 373  Q
    |||||||||||||||||   ||| |||||| ||||||||  | |||| | |||||||||||||||||||| | ||||||| ||||    
T  21922110 cacaaaaaccaaagcaatagagagagaaaa-taagaatatgatgtgagtatgagagagaaagttgtcacaaacgttgtcacaaaa 21922193  T

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Target: scaffold0085 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 212 - 305
Target Start/End: Original strand, 22742 - 22835
Alignment:
Q  212 agaaatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    |||||||||||| ||| ||| ||||||| |||||||| |||||||||||||| ||||||||||||||||  || ||||||||||||||||||||    
T  22742 agaaatgttatttgaacaacaactttttcagacaactaattggacaaccaaagtatacaaagaaatgtatcgattgacacaaaaaccaaagcaa 22835  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 21418248 - 21418353
Alignment:
Q  214 aaatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaa 313  Q
    |||||||||| ||| ||||||||||| | | || | |||||| ||||||||||||||||||||||||| || |||||||||||||||| ||| ||| | |    
T  21418248 aaatgttatttgaataaccactttttaaaataatttattggataaccaaaatatacaaagaaatgtaaggattgacacaaaaaccaaaacaatgaaaaga 21418347  T
Q  314 gaaaaa 319  Q
    ||||||    
T  21418348 gaaaaa 21418353  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 21467933 - 21468020
Alignment:
Q  214 aaatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaa 301  Q
    |||||||||| ||| || |||||||| | | || | |||||||||||||||||||||||||||||||| || |||| |||||||||||    
T  21467933 aaatgttatttgaataatcactttttaaaataatttattggacaaccaaaatatacaaagaaatgtaaggattgactcaaaaaccaaa 21468020  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 34441975 - 34442111
Alignment:
Q  235 tttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtg 334  Q
    ||||| |||||||| ||||||||| |||||| || |||||||||||| ||  | ||||||||||||||||| |  || | | |||  | ||||||| |||    
T  34441975 tttttaagacaacttattggacaatcaaaatgtataaagaaatgtaaggatcgtcacaaaaaccaaagcaatg--gagatataaagtataatacaatgtg 34442072  T
Q  335 actgtgagagagaaagttgtcacagaggttgtcataaaa 373  Q
    | | ||||||||||| |||||||| | ||||||||||||    
T  34442073 agtatgagagagaaaattgtcacaaaagttgtcataaaa 34442111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 302
Target Start/End: Original strand, 21388309 - 21388396
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaag 302  Q
    ||||||||| ||| ||||||||||| | | || | |||| |||| ||||||||| |||||||||||| || ||||||||||| |||||    
T  21388309 aatgttatttgaacaaccactttttaaaataatttattgcacaatcaaaatatataaagaaatgtaaggattgacacaaaaatcaaag 21388396  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 21418410 - 21418442
Alignment:
Q  250 attggacaaccaaaatatacaaagaaatgtaat 282  Q
    |||||||||||||||||||||||||||||||||    
T  21418410 attggacaaccaaaatatacaaagaaatgtaat 21418442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 21468093 - 21468125
Alignment:
Q  250 attggacaaccaaaatatacaaagaaatgtaat 282  Q
    |||||||||||||||||||||||||||||||||    
T  21468093 attggacaaccaaaatatacaaagaaatgtaat 21468125  T

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Target: scaffold0160 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 26586 - 26499
Alignment:
Q  230 accactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaa 317  Q
    |||||||||| |||||||| |||||| |||||||||||||||| |||||||| || ||||| ||||| |||| ||| ||||| |||||    
T  26586 accacttttttagacaacttattggataaccaaaatatacaaacaaatgtaaggattgacataaaaatcaaaacaatgaagagagaaa 26499  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 1840741 - 1840668
Alignment:
Q  232 cactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    |||||||||||||| || ||| ||||| |||||||| ||||||||||||| || ||||||||||| ||||||||    
T  1840741 cactttttgagacatcttattagacaatcaaaatatgcaaagaaatgtaaggattgacacaaaaatcaaagcaa 1840668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 39158285 - 39158223
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaat 277  Q
    ||||||||| ||| ||||| || ||| ||||||| |||||||||||||| |||||||||||||    
T  39158285 aatgttatttgaacaaccatttattgtgacaacttattggacaaccaaattatacaaagaaat 39158223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 373
Target Start/End: Original strand, 42062525 - 42062680
Alignment:
Q  217 tgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgact-gacacaaaaaccaaagcaacgaagaaaga 315  Q
    ||||||| ||| ||||| ||| || |||||||  | ||||||||||||||||||||||||||| | | || | |||||||| |||||||| ||||| ||     
T  42062525 tgttatttgaacaaccattttatgggacaacttgtgggacaaccaaaatatacaaagaaatgtga-gtctaggcacaaaaatcaaagcaatgaagagag- 42062622  T
Q  316 aaaataagaatacaaagtgactgtgagagagaaagttgtcacagaggttgtcataaaa 373  Q
    ||||| | |||| || || | | ||||||| |||||||||| | | ||||||||||||    
T  42062623 aaaatgaaaatataatgtaagtatgagagaaaaagttgtcataaaagttgtcataaaa 42062680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 18316117 - 18316027
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    ||||||||| ||| ||||| || ||  |||||||  ||||||||||||| ||||||||||||| ||   | ||||||||||| ||||||||    
T  18316117 aatgttatttgaacaaccatttcttatgacaacttgttggacaaccaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcaa 18316027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 7209424 - 7209375
Alignment:
Q  255 acaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagca 304  Q
    |||||||||||||||||||||||||||    || ||||||||||||||||    
T  7209424 acaaccaaaatatacaaagaaatgtaagttttgccacaaaaaccaaagca 7209375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 31641528 - 31641599
Alignment:
Q  286 tgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagttgtcaca 358  Q
    ||||||||||| |||||||| | ||| |||||  ||| |||| || |||| ||||||||||||||||||||||    
T  31641528 tgacacaaaaatcaaagcaatggagacagaaag-taaaaatataatgtgagtgtgagagagaaagttgtcaca 31641599  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 49103480 - 49103568
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgac-tgacacaaaaaccaaagc 303  Q
    ||||||||| ||| ||||| ||  ||||||||||  | ||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  49103480 aatgttatttgaataaccatttcatgagacaacttgtgggacaaccaaaatatacaaagaaatgt-atgtcttgacacaaaaaccaaagc 49103568  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 28249461 - 28249551
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    ||||||||| ||| ||||| || ||| |||||||  ||||||||| ||| ||||||||||||| |||  | ||||||||||| ||||||||    
T  28249461 aatgttatttgaacaaccatttcttgtgacaactttttggacaactaaattatacaaagaaatttaagtagtgacacaaaaatcaaagcaa 28249551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 31487371 - 31487306
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgta 280  Q
    ||||||||| ||| ||||||||| || ||||||| || | ||||||||||| ||||||||||||||    
T  31487371 aatgttatttgaacaaccactttatgtgacaacttatggaacaaccaaaatttacaaagaaatgta 31487306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 373
Target Start/End: Complemental strand, 47448960 - 47448849
Alignment:
Q  261 aaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagttgtcacaga 360  Q
    ||||||||||||||||| ||   | || |||||||||||||||||   |||||||||  ||| || |||| |||| | |||||||||||||||||||| |    
T  47448960 aaaatatacaaagaaatttaggtagtggcacaaaaaccaaagcaatagagaaagaaag-taaaaacacaatgtgagtatgagagagaaagttgtcacaaa 47448862  T
Q  361 ggttgtcataaaa 373  Q
     ||||||| ||||    
T  47448861 agttgtcaaaaaa 47448849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 2469769 - 2469729
Alignment:
Q  318 aataagaatacaaagtgactgtgagagagaaagttgtcaca 358  Q
    ||||||||||||| |||| | ||||||||||||||||||||    
T  2469769 aataagaatacaatgtgagtatgagagagaaagttgtcaca 2469729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 10614399 - 10614435
Alignment:
Q  377 tgagttaatgcacatttgtaacttgacatttaaaaaa 413  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  10614399 tgagtaaatgcacatttgtaagttgacatttaaaaaa 10614435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 1040307 - 1040391
Alignment:
Q  219 ttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    ||||| ||| || |||||||||| ||||||  | | ||||||||||||||||||||||| ||  ||| |||||||||||||||||||    
T  1040307 ttatttgaacaatcactttttgatacaacttttggaacaaccaaaatatacaaagaaatata--gacagacacaaaaaccaaagcaa 1040391  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 358
Target Start/End: Original strand, 6511448 - 6511590
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaag 314  Q
    ||||||||| ||| ||||| ||| |  |||||||  | |||||||||||||||| |||||||||| |    ||||||||||||||||||||   ||| ||    
T  6511448 aatgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagaaagaaatgtgagtcttgacacaaaaaccaaagcaatagagagag 6511547  T
Q  315 aaaaataagaatacaaagtgactgtgagagagaaagttgtcaca 358  Q
     ||||| |||||| || || | | ||||||||||| ||||||||    
T  6511548 -aaaatgagaatataatgtaaatatgagagagaaaattgtcaca 6511590  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 373
Target Start/End: Complemental strand, 9194570 - 9194452
Alignment:
Q  255 acaaccaaaatatacaaagaaatgtaatgact-gacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagttg 353  Q
    ||||||||||||||||||||| ||| | | || | ||||||||||||||||| | ||| || ||||| | |||| || |||| | |||||||||||||||    
T  9194570 acaaccaaaatatacaaagaattgtgaggtctaggcacaaaaaccaaagcaatggagagag-aaaatgaaaatataatgtgagtatgagagagaaagttg 9194472  T
Q  354 tcacagaggttgtcataaaa 373  Q
    ||| | | ||||||| ||||    
T  9194471 tcataaaagttgtcacaaaa 9194452  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 6646965 - 6646861
Alignment:
Q  253 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagtt 352  Q
    |||||||||||||||| |||||||||| |    || |||||||||||||||||   ||| || ||||| ||||||  | |||| | ||||||||||||||    
T  6646965 ggacaaccaaaatatagaaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagag-aaaatgagaatatgatgtgagtatgagagagaaagtt 6646867  T
Q  353 gtcaca 358  Q
    ||||||    
T  6646866 gtcaca 6646861  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 40443191 - 40443139
Alignment:
Q  253 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    |||||||||||||||| |||||||||| |  |  |||||||||||||||||||    
T  40443191 ggacaaccaaaatatataaagaaatgttagtatcgacacaaaaaccaaagcaa 40443139  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 40504368 - 40504316
Alignment:
Q  253 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    |||||||||||||||| |||||||||| |  | ||||||||||| ||||||||    
T  40504368 ggacaaccaaaatatataaagaaatgttagtattgacacaaaaatcaaagcaa 40504316  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 44018382 - 44018330
Alignment:
Q  253 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    |||||||||||||||||| |||||||||     ||||||||||||||||||||    
T  44018382 ggacaaccaaaatatacatagaaatgtatgttttgacacaaaaaccaaagcaa 44018330  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 354
Target Start/End: Complemental strand, 35153197 - 35153057
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaa--tatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaa 312  Q
    ||||||||| ||| ||||| ||||| |||||| | |||| ||||||||||  |||| |||||| ||||| || ||||| ||||| |||| ||||| |||     
T  35153197 aatgttatttgaacaaccatttttttagacaagttattgaacaaccaaaatatatataaagaagtgtaaagattgacataaaaatcaaatcaacggagag 35153098  T
Q  313 agaaaaataagaatacaaagtgactgtgagagagaaagttgt 354  Q
    || ||| ||||||||||| |||| | ||||| | ||||||||    
T  35153097 ag-aaagtaagaatacaacgtgagtatgagataaaaagttgt 35153057  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 7612921 - 7613005
Alignment:
Q  250 attggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtga 335  Q
    ||||||||||||||||||||||||||| |||| || ||| | |||||| ||| ||||  |||||| ||| ||||||||||| ||||    
T  7612921 attggacaaccaaaatatacaaagaaacgtaaggattgagagaaaaactaaaacaacagagaaag-aaagtaagaatacaatgtga 7613005  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 373
Target Start/End: Complemental strand, 3946382 - 3946263
Alignment:
Q  253 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagtt 352  Q
    |||||||||||||||| |||||||||| |    || |||||||||||||||||   ||| |||||| | ||||||  | |||| | ||||||||||||||    
T  3946382 ggacaaccaaaatatagaaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagagaaaa-tgagaatatgatgtgagtatgagagagaaagtt 3946284  T
Q  353 gtcacagaggttgtcataaaa 373  Q
    |||||| | ||||||| ||||    
T  3946283 gtcacaaaagttgtcacaaaa 3946263  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 5849486 - 5849544
Alignment:
Q  242 gacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaa 300  Q
    ||||||| ||||||||| |||||||||||||||| | |||  | |||||||||||||||    
T  5849486 gacaacttattggacaatcaaaatatacaaagaagtttaagcattgacacaaaaaccaa 5849544  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 37657131 - 37657028
Alignment:
Q  253 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagtt 352  Q
    ||||||||||||||||  ||||||||| |    || ||||||||||||||||||  ||| |||||| | ||||||  | |||| | ||||||||||||||    
T  37657131 ggacaaccaaaatatagtaagaaatgtgagtcttggcacaaaaaccaaagcaacagagagagaaaa-tgagaatatgatgtgagtatgagagagaaagtt 37657033  T
Q  353 gtcac 357  Q
    |||||    
T  37657032 gtcac 37657028  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 47642498 - 47642560
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaat 277  Q
    ||||||||| ||| ||||| |||||| |||||||  ||||||||||||| |||||||||||||    
T  47642498 aatgttatttgaacaaccattttttgggacaacttgttggacaaccaaattatacaaagaaat 47642560  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 45008091 - 45008137
Alignment:
Q  251 ttggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaac 297  Q
    |||||||| |||||||||||||||||||||| || ||| ||||||||    
T  45008091 ttggacaatcaaaatatacaaagaaatgtaaggattgatacaaaaac 45008137  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 45065831 - 45065935
Alignment:
Q  253 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagtt 352  Q
    |||||| ||||||||| |||||||||| |    ||||||||||||||||||||   ||| || ||||| ||||||  | |||| | ||||||||||||||    
T  45065831 ggacaatcaaaatatagaaagaaatgtgaatcttgacacaaaaaccaaagcaatagagagag-aaaatgagaatatgatgtgagtatgagagagaaagtt 45065929  T
Q  353 gtcaca 358  Q
    ||||||    
T  45065930 gtcaca 45065935  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 34307459 - 34307522
Alignment:
Q  242 gacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    ||||||| |||||||||||||| ||||||||||||| ||   | ||| ||||||||||||||||    
T  34307459 gacaacttattggacaaccaaattatacaaagaaatttaggtagtgatacaaaaaccaaagcaa 34307522  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 4494128 - 4494218
Alignment:
Q  215 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    ||||||||| ||| ||||| || ||  |||||||  ||||||||||||| ||||||||||||| ||   | ||||||||||| ||||||||    
T  4494128 aatgttatttgaacaaccatttcttatgacaacttgttggacaaccaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcaa 4494218  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 48346968 - 48346916
Alignment:
Q  253 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 305  Q
    |||||||| |||||||||||||||| | |  | ||||||||||||||||||||    
T  48346968 ggacaacctaaatatacaaagaaatatgaatattgacacaaaaaccaaagcaa 48346916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 51764765 - 51764729
Alignment:
Q  377 tgagttaatgcacatttgtaacttgacatttaaaaaa 413  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  51764765 tgagtaaatgcacatttgtaagttgacatttaaaaaa 51764729  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 22755 - 22694
Alignment:
Q  218 gttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgt 279  Q
    |||||| ||| ||||| ||| || |||||||  | |||||||||||||||||||||||||||    
T  22755 gttatttgaacaaccattttatgggacaacttgtgggacaaccaaaatatacaaagaaatgt 22694  T

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