View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1584_low_7 (Length: 374)
Name: NF1584_low_7
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 13013385 - 13013028
Alignment:
| Q |
1 |
gacgtaggttaaaagtattaaccttattgctgcaaccacgatttggacaatattcttgatcaataagaatgggattacccacgttattcatcacaatatc |
100 |
Q |
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| T |
13013385 |
gacgtaggttaaaagtattaaccttattgctgcaaccacgatttggacaatactcttgatcaataagaataggattacccacattattcatcacaatatc |
13013286 |
T |
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| Q |
101 |
ttcgtacacaatatgagaagccttcaaaattttagtgaggtgagaagcccaagtcttaattctaagaccattggttgtgtcactaaaggtgcaattcttc |
200 |
Q |
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| T |
13013285 |
ttcgtacacaatatgagaagccttcaaaattttagtgaggggagaagcccaagtcttaattctaagaccattagttgtgtcactaaatgtgcaattcttc |
13013186 |
T |
|
| Q |
201 |
acatttatgttgtcaacatcttcttctccatcattctttccaagacttccaatactaactccatgtccaggaccacaagaaacgtcagagatccaaacat |
300 |
Q |
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| T |
13013185 |
acatttatgttgtcaacatcttcttctccatcattctttccaagacttccaatactaactccatgtccaggaccacaaaaaacgtcagagatccaaacat |
13013086 |
T |
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| Q |
301 |
tcctagtaccagatatcattgcaatgcaatcatcaccggtgccgatgttcgcactttt |
358 |
Q |
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| T |
13013085 |
tcctagtaccagagaccattgcaatacaatcatcaccggtgccgatgctcgcactttt |
13013028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 356
Target Start/End: Complemental strand, 11532539 - 11532358
Alignment:
| Q |
175 |
ttgtgtcactaaaggtgcaattcttcacatttatgttgtcaacatcttcttctccatcattctttccaagacttccaatactaactccatgtccaggacc |
274 |
Q |
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| T |
11532539 |
ttgtgccattaaaggtacaattcttaacaacaatgtcatcaatatcttcttcaccttcattcccaccaagacttccgacactaattccatgaccaggacc |
11532440 |
T |
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| Q |
275 |
acaagaaacgtcagagatccaaacattcctagtaccagatatcattgcaatgcaatcatcaccggtgccgatgttcgcactt |
356 |
Q |
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| T |
11532439 |
acaaaaaacatctgaaattcgaacattcctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacactt |
11532358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 11532667 - 11532611
Alignment:
| Q |
47 |
acaatattcttgatcaataagaatgggattacccacgttattcatcacaatatcttc |
103 |
Q |
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| T |
11532667 |
acaataatcttgatcaatgacaatgggattttgcacattattcatcacaatatcttc |
11532611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 49617087 - 49616760
Alignment:
| Q |
7 |
ggttaaaagtattaaccttattgctgcaaccacgatttggacaatattcttgatcaataagaatgggattacccacgttattcatcacaatatcttcgta |
106 |
Q |
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| T |
49617087 |
ggttaaaagtactaacctgattattgcaagcgctgtttggacaatattcttgatcaataacaatgagtttatacacattattcatcataatatcttcata |
49616988 |
T |
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| Q |
107 |
cacaatatgagaagccttcaaaattttagtgaggtgagaagcccaagtcttaattctaagaccattggttgtgtcactaaaggtgcaattcttcacattt |
206 |
Q |
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| T |
49616987 |
gacaaaattagaaaccttacaagttttgctcaatggagaagcccatgttttagtcctaagaccattgcttctacaactcagggtgtaattcctcatatct |
49616888 |
T |
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| Q |
207 |
atgttgtcaacatcttcttctccatcattctttccaagacttccaatactaactccatgtccaggaccacaagaaacgtcagagatccaaacattcctag |
306 |
Q |
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| T |
49616887 |
atgttttcaaca---tcttccccatcactattaacaaggcttccgacactaaatccacgacaaggaccacacaaaacattggaaatccatacattcccag |
49616791 |
T |
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| Q |
307 |
taccagatatcattgcaatgcaatcatcacc |
337 |
Q |
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| T |
49616790 |
taccagagatcatagcaatgcaatcatcacc |
49616760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 337
Target Start/End: Original strand, 49617317 - 49617495
Alignment:
| Q |
156 |
ttaattctaagaccattggttgtgtcactaaaggtgcaattcttcacatttatgttgtcaacatcttcttctccatcattctttccaagacttccaatac |
255 |
Q |
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| T |
49617317 |
ttaatcctaagaccgttatttgtgcaactgaatgtgcaattcctcatatctatgttttcaacatcttcc---ccatcattcttaccaaggctttcaacac |
49617413 |
T |
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| Q |
256 |
taactccatgtccaggaccacaagaaacgtcagagatccaaacattcctagtaccagatatcattgcaatgcaatcatcacc |
337 |
Q |
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| T |
49617414 |
cgattccatgaccaagaccacaaagaacatatgaaatccaaacattcttagtactagagatcatagcaatgcagtcatcacc |
49617495 |
T |
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