View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1584_low_8 (Length: 373)
Name: NF1584_low_8
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 1163360 - 1163495
Alignment:
| Q |
104 |
aaaaggacaacattttagagaagactttcaaagaggataccattttagaggataaaatgcaggataaccattgatacaaaaccaaactactaagattgtt |
203 |
Q |
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| T |
1163360 |
aaaaggacaacattttatagaagactttcaaagaggataccattttagaggataaaatgcaggataaccattgatacaaaaccaaactactaagattgtt |
1163459 |
T |
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| Q |
204 |
taatttaaagtccaaattgcatattacgctagtata |
239 |
Q |
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| T |
1163460 |
taatttaaagtccaaattgcatattacgctagtata |
1163495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 236 - 358
Target Start/End: Original strand, 1163539 - 1163660
Alignment:
| Q |
236 |
tataataaagacattgtcattagaaggagatggaaataaggcattctga-cttaggcacatgctcataatttaacttt-actataaaagtgaaaaaattg |
333 |
Q |
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| T |
1163539 |
tataataaagacattgtcattagaaggagatggaaa--acg-agtctaaacatcaacacatgctcataatttaacttttactataaaagtgaaaaaattg |
1163635 |
T |
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| Q |
334 |
acctcccaacacagaaactgatatt |
358 |
Q |
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| T |
1163636 |
acctcccaacacagaaactgatatt |
1163660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 1161416 - 1161506
Alignment:
| Q |
16 |
gtaaatggttcctataaatatttagaaaaatgttgatggannnnnnnnnactgtgactaaaaatactaatagaaaatttacaaagatcaaaa |
107 |
Q |
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| T |
1161416 |
gtaaatggttcctataaatatctagcaaaatgttgatgga-ctttttttacggtgactaaaaatgctaatagaaaatttacaaagattaaaa |
1161506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 1159621 - 1159659
Alignment:
| Q |
304 |
tttaactttactataaaagtgaaaaaattgacctcccaa |
342 |
Q |
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| T |
1159621 |
tttaactttactataaaagtgagaaaattgacctcccaa |
1159659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 1182350 - 1182398
Alignment:
| Q |
249 |
ttgtcattagaaggagatggaaataaggcattctgacttaggcacatgc |
297 |
Q |
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| T |
1182350 |
ttgtcattagaaggagatagatataagagattctgacctaggcacatgc |
1182398 |
T |
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