View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1584_low_9 (Length: 356)
Name: NF1584_low_9
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 9589463 - 9589124
Alignment:
| Q |
1 |
gattaacagtcactgtattggacctaaatatttgatttaaaatcaggtgctagaaagcaccaaggcaattgctgatgacaatgttctcgtggtatttttt |
100 |
Q |
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| T |
9589463 |
gattaacagtcactgtattggacctaaatatttgatttaaaatcaggtgctagaaagcaccaaggcaattgctgatgacaatgttctcgtggtatttttt |
9589364 |
T |
|
| Q |
101 |
cactagaaaaatgattaaattgtatatgtacagattgcttgcaacacaaactacattgatcaaataagaatatatactgtttttataaagcagaggttac |
200 |
Q |
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| T |
9589363 |
cactagaaaaatgattaaattgtatatgtacagattgcttgcaacacaaactacattgatcaaataagaatatatacagtttttataaagcagaggttac |
9589264 |
T |
|
| Q |
201 |
gaatttaaatgtatattatacaagattatgcaagtatgatgttctactagaacacttataacaaaatccgacagtaatgttgcaaacattggactaaaaa |
300 |
Q |
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| T |
9589263 |
gaatttaaatgtatattatacaagattatgcaagtatgatgttctactagaacacttataaccaaatccgacagttatgttgcaaacattggactaaaaa |
9589164 |
T |
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| Q |
301 |
tgtactcttttcagtctctacttctcatccgtcataagtg |
340 |
Q |
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| T |
9589163 |
tgtactcttttcagtctctacttctcatccgtcataagtg |
9589124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 37025290 - 37025342
Alignment:
| Q |
276 |
aatgttgcaaacattggactaaaaatgtactcttttcagtctctacttctcatc |
329 |
Q |
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| T |
37025290 |
aatgttgcaaactttggacttaaag-gtactcttttcagtctcaacttctcatc |
37025342 |
T |
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