View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15850_high_6 (Length: 265)
Name: NF15850_high_6
Description: NF15850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15850_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 4859741 - 4859513
Alignment:
| Q |
17 |
aaggtgaccgtgacaggacatacaaaagcttggatattgacatttcattaccggggtctaatgactcagagagactagaaaatatatagtggtagtgtaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4859741 |
aaggtgaccgtgacaggacatacaaa-gcttggatattgacatttcattaccggggtctcatgactcagagagactagaaaatatatagtgttagtgtaa |
4859643 |
T |
|
| Q |
117 |
ttggaaggaattgaattttgagttgaagatccagtagttttgcaacaaaggaaggggacataatgaggagagagagtatgagaataaaagaggaaaccaa |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4859642 |
ttggaaggaattgaattttgagttggagatccagtagttttgcaacaaaggaaggggacataatgaggagagagagtatgagaataaaagaggaaaccaa |
4859543 |
T |
|
| Q |
217 |
tttgcatgacatgagaggcatttgaattct |
246 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
4859542 |
tttgcatgacatgagaggcatttcaattct |
4859513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University