View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15850_low_10 (Length: 258)
Name: NF15850_low_10
Description: NF15850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15850_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 14788728 - 14788497
Alignment:
| Q |
19 |
ctatctccatagaaactattaaaagagtctctatgaggctcatcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaac |
118 |
Q |
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| T |
14788728 |
ctatctccatagaaactattaaaagagtctctatgaggctcatcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaac |
14788629 |
T |
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| Q |
119 |
tatcactagcaagaggcaatgatgtttccattttaaaatgtttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggaca |
218 |
Q |
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| T |
14788628 |
tatcactagcaagaggcaatgatgtttccattttaaaatgtttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggaca |
14788529 |
T |
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| Q |
219 |
aagtttatttgaagcaacaatgaaagaataat |
250 |
Q |
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| T |
14788528 |
aagtttatttgaagcaacaatgaaaaaataat |
14788497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 17543819 - 17544049
Alignment:
| Q |
19 |
ctatctccatagaaactattaaaagagtctctatgaggctcatcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543819 |
ctatctccatagaaactattaaaagagtctctatgaggctcatcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaac |
17543918 |
T |
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| Q |
119 |
tatcactagcaagaggcaatgatgtttccattttaaaatgtttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggaca |
218 |
Q |
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| T |
17543919 |
tatcactagcaagaggcaatgatgtttccattttaaaatgtttattgcaacagatgtgttgtgtgaattaatat-aaaaatgtgtataccaataaggaca |
17544017 |
T |
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| Q |
219 |
aagtttatttgaagcaacaatgaaagaataat |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
17544018 |
aagtttatttgaagcaacaatgaaagaataat |
17544049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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