View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15850_low_2 (Length: 545)
Name: NF15850_low_2
Description: NF15850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15850_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 15 - 529
Target Start/End: Original strand, 6104095 - 6104610
Alignment:
| Q |
15 |
gaagcacaaacggcagaaataacattgacactggtagtaacttgattaaatgcaaccacatgtgttggtgttgtgttagtattggagactgaacacattc |
114 |
Q |
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| T |
6104095 |
gaagcacaaacggcagaaataacattgacactggtagtaacttgattaaatgcaaccacatttgttggtgttgtgttagtgttggagactgaacacattc |
6104194 |
T |
|
| Q |
115 |
aacatgaagtgtcaatgtgcttcaattcaagagtatggtagaggatgaactaaccattattttacagaaacggttgcaatcccttgacatgaaagacaac |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6104195 |
aacatgaagtgtcaatgtgcttcaattcaagagtatggtagagaatgaactaaccattattttacagaaacggttgcaatcccttgacatgaaagacagc |
6104294 |
T |
|
| Q |
215 |
caccgttttgcaccttcttcagcttttgtagcattcttgactgccattcttgcctgaaaatcagtaatcaagtactattaacaggtactaaaatacgtca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
6104295 |
caccgttttgcaccttcttcagcttttgtagcattcttgactgccattcttgcctgaaaatcagtaatcaagaactattaacaggtactaaaatatgtca |
6104394 |
T |
|
| Q |
315 |
aattaaatgtattcttacatccttg-aaaatcaaaattacaagaaagttgtacatttcaaatttttaaataggaacataggaagggcaaataatgaacca |
413 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6104395 |
aattaaatgtattcttacatccttgaaaaatcaaaattacaagaaagttgtacaattcaaatttttaaataggaacataggaagggcaaataatgaacca |
6104494 |
T |
|
| Q |
414 |
aaaacctgaagggagggcattaaaatgtaaacagaggacaaatctaccataactgagtacattaaactatttatagacataacctccttctttaataaaa |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6104495 |
aaaacctgaagggagggcattaaaatgtaaacagaggacaaatctactataactgagtacattaaactatttatagacataacctccttctttaataaaa |
6104594 |
T |
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| Q |
514 |
gactaatgtacaagct |
529 |
Q |
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||| ||| |||||||| |
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| T |
6104595 |
gacaaatttacaagct |
6104610 |
T |
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