View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15850_low_3 (Length: 412)
Name: NF15850_low_3
Description: NF15850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15850_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 1247951 - 1248121
Alignment:
| Q |
1 |
gttatgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatct |
100 |
Q |
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| T |
1247951 |
gttatgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatct |
1248050 |
T |
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| Q |
101 |
gtttattgtttaattgaatgtattgtgaaaatgtactaattgttttgtgattttttgggtgtttatggtga |
171 |
Q |
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| T |
1248051 |
gtttattgtttaattgaatgtattgtgaaaatgtgctaattgttttgtgattttttgggtgtttatggtga |
1248121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 231 - 388
Target Start/End: Original strand, 1248181 - 1248338
Alignment:
| Q |
231 |
gggggtgatgaattgtaaatgaatgatatttgtgaggttttaacaagttaactgtatgatgtgaaattaatgctagttggatgtgttgtgaaaatgtgct |
330 |
Q |
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| T |
1248181 |
gggggtgatgaattgtaaatgaatgatatttgtgaggttttaacaagttaactgtatgatgtgaaattaatgctagttggatgtgttgtgaaaatgtgct |
1248280 |
T |
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| Q |
331 |
aattgatattgtgattttcctttgtgaatttatggtgattgattggttataaacttgt |
388 |
Q |
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| T |
1248281 |
aattgatattgtgattttcctttgtgaatttatggtgattgattggttataaacttgt |
1248338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 1248616 - 1248681
Alignment:
| Q |
91 |
tgtatgatctgtttattgtttaattgaatgtattgtgaaaatgtactaatt-gttttgtgattttt |
155 |
Q |
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| T |
1248616 |
tgtatgatctgtttagtgcttaattgaatgtattgtgaaaatgtgctaattcattttgtgattttt |
1248681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 42014723 - 42014893
Alignment:
| Q |
1 |
gttatgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatct |
100 |
Q |
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| T |
42014723 |
gttatgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatct |
42014822 |
T |
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| Q |
101 |
gtttattgtttaattgaatgtattgtgaaaatgtactaattgttttgtgattttttgggtgtttatggtga |
171 |
Q |
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| T |
42014823 |
gtttagtgtttaattgaatatattgtgaaaatgtgctaattgttttgtgattttttgggtgtttatggtga |
42014893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 231 - 388
Target Start/End: Original strand, 42014953 - 42015110
Alignment:
| Q |
231 |
gggggtgatgaattgtaaatgaatgatatttgtgaggttttaacaagttaactgtatgatgtgaaattaatgctagttggatgtgttgtgaaaatgtgct |
330 |
Q |
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| T |
42014953 |
gggggtgatgaattgtaaatgaatgatatttgtgaggttttaacaagttaactgtatgatgtgaaattaatgctagttggatgtgttgtgaaaatatgct |
42015052 |
T |
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| Q |
331 |
aattgatattgtgattttcctttgtgaatttatggtgattgattggttataaacttgt |
388 |
Q |
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| T |
42015053 |
aattgattttgtgattttcctttgtgaatttatggtaattgattggttataaacttgt |
42015110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 42015386 - 42015463
Alignment:
| Q |
79 |
ttttaaggtgattgtatgatctgtttattgtttaattgaatgtattgtgaaaatgtactaatt-gttttgtgattttt |
155 |
Q |
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| T |
42015386 |
ttttaagttaattgtatgatctgtttagtgcttaattgaatgtgttgtgaaaatgtgctaattcattttgtgattttt |
42015463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 42015425 - 42015462
Alignment:
| Q |
311 |
atgtgttgtgaaaatgtgctaattgatattgtgatttt |
348 |
Q |
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| T |
42015425 |
atgtgttgtgaaaatgtgctaattcattttgtgatttt |
42015462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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