View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15850_low_6 (Length: 301)

Name: NF15850_low_6
Description: NF15850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15850_low_6
NF15850_low_6
[»] chr8 (15 HSPs)
chr8 (11-181)||(19288442-19288612)
chr8 (11-181)||(19171582-19171753)
chr8 (180-288)||(19288258-19288368)
chr8 (75-181)||(19397997-19398103)
chr8 (75-181)||(19414353-19414459)
chr8 (24-181)||(19346988-19347144)
chr8 (77-182)||(19377678-19377783)
chr8 (75-155)||(19338214-19338294)
chr8 (75-180)||(19406127-19406229)
chr8 (75-153)||(19356241-19356319)
chr8 (75-181)||(19552779-19552885)
chr8 (75-181)||(19579803-19579909)
chr8 (75-181)||(19453065-19453168)
chr8 (75-181)||(19527908-19528011)
chr8 (180-249)||(19171854-19171925)
[»] chr1 (1 HSPs)
chr1 (81-181)||(36312791-36312891)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 19288612 - 19288442
Alignment:
Q  11 caaagggaatgagtttagtaaatatgtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaagg 110  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19288612 caaagggattgagtttagtaaatatgtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaagg 19288513  T
Q  111 agtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcatt 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19288512 agtgggcataatatgagtatagcagctgctattgcagcacctatcaatatccacctgtttttacctgcatt 19288442  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 19171582 - 19171753
Alignment:
Q  11 caaagggaatgagtttagtaaatat-gtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaag 109  Q
    |||||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||  | ||| |||||||    
T  19171582 caaagggaatgagtttcgtaaatatcgtactaaactatatttgaaatatccaagtacctttacgtgcatatttttgtttctttttcgcgacaaataaaag 19171681  T
Q  110 gagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcatt 181  Q
     ||||||||||||| |||||||||||||||||||||| |||| ||| | |||| | || |||||||||||||    
T  19171682 aagtgggcataataggagtatagcagctgctattgcaacaccaatccatatccgcatgcttttacctgcatt 19171753  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 19288368 - 19288258
Alignment:
Q  180 ttttaaatgttctata--atatgtataatgctggtaggagtaacttatacagcggcgaagatctatcaccctatgtataactcgcatctgcgcgtgatct 277  Q
    ||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||||| ||| ||||| || ||||||||| |||| ||| |||||||    
T  19288368 ttttaaatgttctatataatatgtctaatgctggtaggagtaacttatacaacggcgaagctctgtcaccttacgtataactcacatcagcgtgtgatct 19288269  T
Q  278 atatatatagt 288  Q
    |||||||||||    
T  19288268 atatatatagt 19288258  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 19398103 - 19397997
Alignment:
Q  75 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 174  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| ||||| ||| ||||||||||||||| |  ||||||| ||| |||    
T  19398103 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagcagttgcaattgcagcacctatccatttccacctttttatac 19398004  T
Q  175 ctgcatt 181  Q
    |||||||    
T  19398003 ctgcatt 19397997  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 19414459 - 19414353
Alignment:
Q  75 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 174  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| ||||| ||  ||||||||||||||| | |||||||| ||| |||    
T  19414459 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagcagttgtaattgcagcacctatccatatccacctttttatac 19414360  T
Q  175 ctgcatt 181  Q
    |||||||    
T  19414359 ctgcatt 19414353  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 19347144 - 19346988
Alignment:
Q  24 tttagtaaatatgtactaaactatgtttgaagtatccaagtacctttacgcgcatatttttgtttccttttgactacacataaaaggagtgggcataata 123  Q
    ||||||| || || |||| ||||| |||||||||||||  |||||| | | ||||||||||||||| ||||| |||  ||||||| || |||||| ||||    
T  19347144 tttagtacatttgaactagactat-tttgaagtatccatataccttgaagtgcatatttttgtttctttttggctaagcataaaatgattgggcaaaata 19347046  T
Q  124 tgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcatt 181  Q
    |||||| ||||||||| |||| || |  |||| | |||||| | ||||||||||||||    
T  19347045 tgagtaaagcagctgcgattgtagaagttatccatatccacttttttttacctgcatt 19346988  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 19377783 - 19377678
Alignment:
Q  77 atatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacct 176  Q
    ||||||||||||| ||||| |||  |||| || |||||||||||||||||||| ||||| | | |||||| |||||||| | |||||| | |||||||||    
T  19377783 atatttttgtttctttttggctagccatataatgagtgggcataatatgagtaaagcagttccgattgcaacacctatccatatccacttttttttacct 19377684  T
Q  177 gcattt 182  Q
    ||||||    
T  19377683 gcattt 19377678  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 19338294 - 19338214
Alignment:
Q  75 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatc 155  Q
    ||||||||||||||| ||||| |||   |||||| |||||||||||||||||||| ||||| ||| |||||||||||||||    
T  19338294 gcatatttttgtttctttttggctaggaataaaatgagtgggcataatatgagtaaagcagttgcgattgcagcacctatc 19338214  T

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Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 19406229 - 19406127
Alignment:
Q  75 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 174  Q
    |||||||||||  || |||| ||||  ||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||| | ||||||   |||||||    
T  19406229 gcatatttttgaatcttttttactaggcataaaacgagtggacataatatgagtatagcagatgcgattgcagcacctatccatatccac---tttttac 19406133  T
Q  175 ctgcat 180  Q
    ||||||    
T  19406132 ctgcat 19406127  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 19356319 - 19356241
Alignment:
Q  75 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcaccta 153  Q
    ||||||||||||||| ||||| |||  ||||||| |||||||||||||||||||| || || ||| |||||||||||||    
T  19356319 gcatatttttgtttctttttggctaggcataaaatgagtgggcataatatgagtaaagaagttgcgattgcagcaccta 19356241  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 19552779 - 19552885
Alignment:
Q  75 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 174  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| || || ||| |||||||||| |||| | |||||||  ||| |||    
T  19552779 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagtagttgcaattgcagcacatatccatatccaccattttatac 19552878  T
Q  175 ctgcatt 181  Q
    |||||||    
T  19552879 ctgcatt 19552885  T

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Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 19579909 - 19579803
Alignment:
Q  75 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 174  Q
    |||||||||| |||| ||||| |||  |||| || |||||||||||||||||||| || || ||| |||||||||| |||| | |||||||  ||| |||    
T  19579909 gcatatttttttttctttttggctagccatataatgagtgggcataatatgagtaaagtagttgcaattgcagcacatatccatatccaccattttatac 19579810  T
Q  175 ctgcatt 181  Q
    |||||||    
T  19579809 ctgcatt 19579803  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 19453168 - 19453065
Alignment:
Q  75 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 174  Q
    |||||||||||  || |||| ||||  |||||||||||||| |||| |||||| | ||||| ||| ||||||||||||||| | ||||||   |||||||    
T  19453168 gcatatttttgaatcttttttactaggcataaaaggagtggacatagtatgagcagagcagatgcgattgcagcacctatccatatccac---tttttac 19453072  T
Q  175 ctgcatt 181  Q
    |||||||    
T  19453071 ctgcatt 19453065  T

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Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 19527908 - 19528011
Alignment:
Q  75 gcatatttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttac 174  Q
    |||||||||||  || |||| ||||  |||||||||||||| |||| |||||| | ||||| ||| ||||||||||||||| | ||||||   |||||||    
T  19527908 gcatatttttgaatcttttttactaggcataaaaggagtggacatagtatgagcagagcagatgcgattgcagcacctatccatatccac---tttttac 19528004  T
Q  175 ctgcatt 181  Q
    |||||||    
T  19528005 ctgcatt 19528011  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 19171854 - 19171925
Alignment:
Q  180 ttttaaatgttctata--atatgtataatgctggtaggagtaacttatacagcggcgaagatctatcaccct 249  Q
    ||||||||||||| ||  |||||| || || |||||||||||||||| |||| ||||||| |||||| ||||    
T  19171854 ttttaaatgttctgtatgatatgtctattgttggtaggagtaacttaaacagaggcgaagctctatcgccct 19171925  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 36312791 - 36312891
Alignment:
Q  81 ttttgtttccttttgactacacataaaaggagtgggcataatatgagtatagcagctgctattgcagcacctatcaacatccacctgtttttacctgcat 180  Q
    |||| |||| ||||| |||  ||||||| ||| ||| | |||||||||| ||||| ||| ||||||||| ||||  | ||||| || |||||||||||||    
T  36312791 ttttttttctttttggctatgcataaaatgagcgggaacaatatgagtaaagcagttgcgattgcagcagctattcatatccatctttttttacctgcat 36312890  T
Q  181 t 181  Q
    |    
T  36312891 t 36312891  T

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