View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15850_low_7 (Length: 300)
Name: NF15850_low_7
Description: NF15850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15850_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 89 - 298
Target Start/End: Complemental strand, 26423395 - 26423186
Alignment:
| Q |
89 |
ccttgttggtttgtaatttgtaaactatttttatttggatatgcaagactcataacatattttgagaatctgatgctttcaaatgttgttatgccaatta |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26423395 |
ccttgttggtttgtaatttgtaaactatttttatttggatatgcaagactcataacatattttgagaatctggtgctttcaaatgttgttatgccaatta |
26423296 |
T |
|
| Q |
189 |
gtttacccttatatatattgagttatttcgtgtaatgctactgacatagtataattaaaagcgaacagaaaagaaaaggtttgtatgagtgttattttct |
288 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26423295 |
gtttacccttatatatattgagttacttcgtgtaatgctaccgacatagtataattaaaagcgaacagaaaagaaaaggtttgtatgaatgttattttct |
26423196 |
T |
|
| Q |
289 |
cccttttcct |
298 |
Q |
| |
|
|||||||||| |
|
|
| T |
26423195 |
cccttttcct |
26423186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University