View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15850_low_8 (Length: 269)
Name: NF15850_low_8
Description: NF15850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15850_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 1245730 - 1245975
Alignment:
| Q |
1 |
ctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaaattctaatgcctagtattag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245730 |
ctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaaattctaatgcctagtattag |
1245829 |
T |
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| Q |
101 |
tagcctttttcctaggnnnnnnngcttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaaaaatttgttctaattttgtg |
200 |
Q |
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| T |
1245830 |
tagcctttttcctaggaaaaaaagcttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtg--aaatttgttctaattttgtg |
1245927 |
T |
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| Q |
201 |
agagtagcatgttgatttatgtgagagtagagttctatgctatcagat |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245928 |
agagtagcatgttgatttatgtgagagtagagttctatgctatcagat |
1245975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 42010392 - 42010637
Alignment:
| Q |
1 |
ctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaaattctaatgcctagtattag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
42010392 |
ctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggaaaaagggaagaaaattctattgcctagtattag |
42010491 |
T |
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| Q |
101 |
tagcctttttcctaggnnnnnnngcttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaaaaatttgttctaattttgtg |
200 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42010492 |
tagcttttttcctaggaaaaaaagcttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtg--aaatttgttctaattttgtg |
42010589 |
T |
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| Q |
201 |
agagtagcatgttgatttatgtgagagtagagttctatgctatcagat |
248 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42010590 |
agagtagcatgttgatttatgtgagagtagagttttatgctatcagat |
42010637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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