View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15851_high_3 (Length: 417)
Name: NF15851_high_3
Description: NF15851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15851_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 36771121 - 36770723
Alignment:
| Q |
19 |
agttaaaacttagttagctagagtttgtcattaggtagttagttagttgatttctcacaagctttctaatagaacttataattaaattctgttactgaca |
118 |
Q |
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| T |
36771121 |
agttaaaacttagttagctagagtttgttattaggtagttagttagttgatttctcacaagctttctaatagaacttataattaaattctgttactgaca |
36771022 |
T |
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| Q |
119 |
gaaggcatagcgattcgcagacagtccacaaaatgacaccacagaaactgtaatatcccacaaagccacctttaaataatcaccagaccacttaaaaaac |
218 |
Q |
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| T |
36771021 |
gaagtcatagcgattcgcagacagtccacaaaatgacaccacagaaactgtaatatcccacaaagccacctttaaataatcaccagaccacttaaaaaac |
36770922 |
T |
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| Q |
219 |
aagttcaatgcaaacaatgttccttacgatgttatttatatgcagggtctgaaaataggtcccaccatttagtgtattgtatgcggcttagcttgnnnnn |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36770921 |
aagttcaatgcaaacaatgttccttacgatgttaattatatgcagggtctgaaaataggtcccaccatttagtgtattgtatgcggcttaccttg-tttt |
36770823 |
T |
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| Q |
319 |
nnacataagagcctgttatcaaaacttgaactcgtggcttacaatacatgtaaactacaatacaactat-aaaaaatcctcaactataaaaagtatcaat |
417 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36770822 |
ttacataagaggctgttatcaaaacttgaactcgtggcttacaatacatgtaaactacaatacaactataaaaaaatcctcaactataaaaagtatcaat |
36770723 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 8418879 - 8418930
Alignment:
| Q |
28 |
ttagttagctagagtttgtcattaggtagttagttagttgatttctcacaag |
79 |
Q |
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|||||||| || ||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
8418879 |
ttagttagttaaagtttgttattaggtagttagtttgttaatttctcacaag |
8418930 |
T |
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