View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15851_high_5 (Length: 262)
Name: NF15851_high_5
Description: NF15851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15851_high_5 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 25489 - 25257
Alignment:
| Q |
19 |
tcataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctatttatcattatccta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25489 |
tcataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctatttatcattatccta |
25390 |
T |
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| Q |
119 |
atatttctcgtaacatatatgatatcgaatatgtgaacagaagtcttaaagtgctgaaccaaaaaacttgcataagattaattgtgcaagttacatatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25389 |
atatttctcgtaacatatatgatatcgaatatgtgaacagaagtcttaaagtgctgaaccaaaaaacttgaataagattaattgtgcaagttacatatat |
25290 |
T |
|
| Q |
219 |
aacttacctcgatgaggctttaagttgcttcat |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25289 |
aacttacctcgatgaggctttaagttgcttcat |
25257 |
T |
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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 6927517 - 6927641
Alignment:
| Q |
20 |
cataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatccta |
118 |
Q |
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||||||||||||| ||| || || | ||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| || |
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| T |
6927517 |
cataatggaagccatttcagtatattaaggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcata |
6927616 |
T |
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| Q |
119 |
atatttctcgtaacatatatgatat |
143 |
Q |
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|||||| | ||||||||| |||||| |
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| T |
6927617 |
atattttttgtaacatatctgatat |
6927641 |
T |
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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 502774 - 502898
Alignment:
| Q |
20 |
cataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatccta |
118 |
Q |
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||||||||||||| ||| || || | ||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| || |
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| T |
502774 |
cataatggaagccatttcagtatattaaggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcata |
502873 |
T |
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| Q |
119 |
atatttctcgtaacatatatgatat |
143 |
Q |
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|||||| | ||||||||| |||||| |
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| T |
502874 |
atattttttgtaacatatctgatat |
502898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 17254482 - 17254606
Alignment:
| Q |
20 |
cataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatccta |
118 |
Q |
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||||||||||||| ||| || || | ||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| || |
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| T |
17254482 |
cataatggaagccatttcagtatattaaggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcata |
17254581 |
T |
|
| Q |
119 |
atatttctcgtaacatatatgatat |
143 |
Q |
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|||||| | ||||||||| |||||| |
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| T |
17254582 |
atattttttgtaacatatctgatat |
17254606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 20374657 - 20374533
Alignment:
| Q |
20 |
cataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatccta |
118 |
Q |
| |
|
||||||||||||| ||| || || | ||||| ||||||||||||| ||||||| |||||| ||||||| ||||||||||||| ||||||||||| || |
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| T |
20374657 |
cataatggaagccatttcagtatattaaggatacatatgtatcctcgattgaaagattaatttataatctgcatttatcttctatattatcattatcata |
20374558 |
T |
|
| Q |
119 |
atatttctcgtaacatatatgatat |
143 |
Q |
| |
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|||||| | ||||||||| |||||| |
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|
| T |
20374557 |
atattttttgtaacatatttgatat |
20374533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 14539310 - 14539407
Alignment:
| Q |
47 |
aggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatcctaatatttctcgtaacatatatgatat |
143 |
Q |
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||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| |||||||| | ||||||||| |||||| |
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| T |
14539310 |
aggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcataatattttttgtaacatatctgatat |
14539407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 20855518 - 20855642
Alignment:
| Q |
20 |
cataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatccta |
118 |
Q |
| |
|
||||||||||||| ||| || || | ||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| || |
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| T |
20855518 |
cataatggaagccatttcagtatattaaggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcata |
20855617 |
T |
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| Q |
119 |
atatttctcgtaacatatatgatat |
143 |
Q |
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|||| | | ||||||||| |||||| |
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| T |
20855618 |
atatcttttgtaacatatctgatat |
20855642 |
T |
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