View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15851_low_1 (Length: 597)
Name: NF15851_low_1
Description: NF15851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15851_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 31 - 580
Target Start/End: Original strand, 29104490 - 29105039
Alignment:
| Q |
31 |
ggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaactgttgattttcatctcaagaacttcccagtccatcttattcat |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104490 |
ggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcctctaaccaactgttgattttcatctcaagaacttcccagtccatcttattcat |
29104589 |
T |
|
| Q |
131 |
cttcgagaaacttcgttcctccacgtcgagtttataaataccttcatcgacgatggattttctcaccgtggtgtaaactcttatacattcttttccataa |
230 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104590 |
cttcgagaaacttcgttcctccacgttgagtttataaataccttcatcgacgatggattttctcaccgtggtgtaaactcttatacattcttttccataa |
29104689 |
T |
|
| Q |
231 |
ccgttttttaccatgcactcagcaataattatcaaatcatccacagcatcggaagaaatgcgctcgacttcagagatacaatcctctgcagcgcgaatat |
330 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29104690 |
ccgttttttaccatgcactcagcaataattctcaaatcatccacagcatcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatat |
29104789 |
T |
|
| Q |
331 |
catcttcttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaagcctggttcatggttaa |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29104790 |
catcttcttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaggcctggttcatggttaa |
29104889 |
T |
|
| Q |
431 |
tatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgag |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104890 |
tatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgagcatggatgagtttcggagacgatggttcgagctcgagtaacgag |
29104989 |
T |
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| Q |
531 |
tgcatggctctttgaagttggtgaacgtggtgaatatactgaatggcttc |
580 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29104990 |
tgcatggctctttgaagttggttaacgtggtgaatatactgaatggcttc |
29105039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 31 - 581
Target Start/End: Original strand, 29090229 - 29090779
Alignment:
| Q |
31 |
ggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaactgttgattttcatctcaagaacttcccagtccatcttattcat |
130 |
Q |
| |
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|||| |||||||| | ||||| || ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29090229 |
ggtttctctctccagaaaagagtgttctcactgagatcttaactgcctctaaccaacagttgattttcatctcaagaacttcccagtccatcttattccc |
29090328 |
T |
|
| Q |
131 |
cttcgagaaacttcgttcctccacgtcgagtttataaataccttcatcgacgatggattttctcaccgtggtgtaaactcttatacattcttttccataa |
230 |
Q |
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|||||||||||||||||||||||| | |||||| |||| ||||||||| || || |||||||| |||||||||||||| ||| ||| |||||||| ||| |
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| T |
29090329 |
cttcgagaaacttcgttcctccacattgagtttgtaaacaccttcatcaacaatcgattttctaaccgtggtgtaaacgtttacacactcttttccgtaa |
29090428 |
T |
|
| Q |
231 |
ccgttttttaccatgcactcagcaataattatcaaatcatccacagcatcggaagaaatgcgctcgacttcagagatacaatcctctgcagcgcgaatat |
330 |
Q |
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||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||| ||| || ||||||||||||||||||| |||| || || || |
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| T |
29090429 |
ccgttagaaaccatgcactcggcaataattttcaaatcatccaccacatcggaagaaacgcgttcaacttcagagatacaatcctgtgcatcgtgatcat |
29090528 |
T |
|
| Q |
331 |
catcttcttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaagcctggttcatggttaa |
430 |
Q |
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| || |||||| ||||||| ||||||||||||| ||||||||| || |||||| || ||||||||||||| ||||||| | ||||||||||||||||| |
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| T |
29090529 |
cgtcgtcttccagtgttccaccatcaaaagaaccgaaagaagtgctaaaggatctgatggagaaggattcagagtctaagtatgcctggttcatggttaa |
29090628 |
T |
|
| Q |
431 |
tatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgag |
530 |
Q |
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|||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
29090629 |
gatctggtagaattctttttggagcctcttcatagcaatttgcattaggttttgtgcgtggatgagttctggagacgatggttcgagctcgagtaacgag |
29090728 |
T |
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| Q |
531 |
tgcatggctctttgaagttggtgaacgtggtgaatatactgaatggcttca |
581 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
29090729 |
tgcatggctctttgaagttggttaacgtggtgaatgtactgaatggcttca |
29090779 |
T |
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Back To:
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