View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15851_low_2 (Length: 429)

Name: NF15851_low_2
Description: NF15851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15851_low_2
NF15851_low_2
[»] chr4 (3 HSPs)
chr4 (67-411)||(1948811-1949155)
chr4 (67-400)||(1977251-1977584)
chr4 (67-402)||(1984172-1984507)
[»] chr7 (1 HSPs)
chr7 (193-337)||(5625905-5626049)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 67 - 411
Target Start/End: Complemental strand, 1949155 - 1948811
Alignment:
Q  67 atgaaccaaacacataagacttcataaatttcaacattttcaccttcattctactattataaaacttgttaacatcttcaatagtcttatccaagaacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1949155 atgaaccaaacacataagacttcataaatttcaacattttcaccttcattctactattataaaacttgttaacatcttcaatagtcttatccaagaacaa 1949056  T
Q  167 tacccttgataatctcaatgacttgctcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttaga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1949055 tacccttgataatctcaatgacttgctcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttaga 1948956  T
Q  267 atcttcgcatcatcttccgagtctataattccattcatcaattcggtgtaacgtgttataaccaatggtcccgatccaaccgatgattcatacgcaacca 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1948955 atcttcgcatcatcttccgagtctataattccattcatcaattcggtgtaccgtgttataaccaatggtcccgatccaaccgatgattcatacgcaacca 1948856  T
Q  367 agtttctaagaaaaacttcggtattaacatccaaaccgataatag 411  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  1948855 agtttcttagaaaaacttcggtattaacatccaaaccgataatag 1948811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 67 - 400
Target Start/End: Original strand, 1977251 - 1977584
Alignment:
Q  67 atgaaccaaacacataagacttcataaatttcaacattttcaccttcattctactattataaaacttgttaacatcttcaatagtcttatccaagaacaa 166  Q
    |||||||||||||||||||||||||||||||| | || || | ||||||| || ||||||||  |||||||||||||||||||||||||||||||||       
T  1977251 atgaaccaaacacataagacttcataaatttccaaatcttgatcttcattgtattattataactcttgttaacatcttcaatagtcttatccaagaatgg 1977350  T
Q  167 tacccttgataatctcaatgacttgctcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttaga 266  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||| |||||| || |||||||||| ||||||||||||||||||||||    
T  1977351 tacccttgacaatctcaatgacttgctcattccattccacatgttagccacttcttgatcactctttaagtgatttagaataatccctttttctcttaga 1977450  T
Q  267 atcttcgcatcatcttccgagtctataattccattcatcaattcggtgtaacgtgttataaccaatggtcccgatccaaccgatgattcatacgcaacca 366  Q
    ||||| ||||| |  || |||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  1977451 atctttgcatctttctcggagtctatgattccattcatcaattctgtgtaacgagttataaccaaaggtcccgatccaaccgatgattcatatgcaacca 1977550  T
Q  367 agtttctaagaaaaacttcggtattaacatccaa 400  Q
    ||||||| |||||||||||||| |||||||||||    
T  1977551 agtttcttagaaaaacttcggtgttaacatccaa 1977584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 67 - 402
Target Start/End: Original strand, 1984172 - 1984507
Alignment:
Q  67 atgaaccaaacacataagacttcataaatttcaacattttcaccttcattctactattataaaacttgttaacatcttcaatagtcttatccaagaacaa 166  Q
    |||||||||||||||||||||||||||||||| | || || | ||||||| || ||||||||  || ||| ||||||||||||||||||||||||||       
T  1984172 atgaaccaaacacataagacttcataaatttccaaatcttgatcttcattgtattattataactctggtttacatcttcaatagtcttatccaagaatgg 1984271  T
Q  167 tacccttgataatctcaatgacttgctcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttaga 266  Q
    ||||||||| ||||||||| |||||||||||||||||||||| | ||| ||||||| |||||| || |||||||||| ||||||||||||||||||||||    
T  1984272 tacccttgacaatctcaataacttgctcattccattccacatgttagccacttcttgatcactctttaagtgatttagaataatccctttttctcttaga 1984371  T
Q  267 atcttcgcatcatcttccgagtctataattccattcatcaattcggtgtaacgtgttataaccaatggtcccgatccaaccgatgattcatacgcaacca 366  Q
    ||||| ||||| |  || || ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| || |||||||    
T  1984372 atctttgcatcgttctcggaatctataattccattcatcaattccgtgtaacgagttataaccaaaggtcccgatccaaccgatgattcgtatgcaacca 1984471  T
Q  367 agtttctaagaaaaacttcggtattaacatccaaac 402  Q
    |||||| ||||||||||||||| || ||||||||||    
T  1984472 agtttcgaagaaaaacttcggtgttgacatccaaac 1984507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 193 - 337
Target Start/End: Complemental strand, 5626049 - 5625905
Alignment:
Q  193 tcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttagaatcttcgcatcatcttccgagtctat 292  Q
    ||||||||||||||| || ||| || |||| ||||||||| || || || ||||||| |||||||||||| |||||| | ||||| || || | ||||||    
T  5626049 tcattccattccacaaattagccacctcttgatcactttttaaatggttcaaaataacccctttttctctaagaatccttgcatcttcctcagtgtctat 5625950  T
Q  293 aattccattcatcaattcggtgtaacgtgttataaccaatggtcc 337  Q
     |||||||||||||| ||||| ||||| |  | ||||||||||||    
T  5625949 gattccattcatcaactcggtataacgcgcgaaaaccaatggtcc 5625905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University