View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15852_high_3 (Length: 249)
Name: NF15852_high_3
Description: NF15852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15852_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 37964349 - 37964585
Alignment:
| Q |
13 |
atactaactgaagaaggaagaaaatgcatgaagcaggcgatttctctactaaattttctgaaatccaatgtctagaggacttgaattatacttatcagtt |
112 |
Q |
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| T |
37964349 |
atactaactgaagaaggaagaaaatgcatgaaacagacgatttctctactaaattttctgaaatccaatgtttagaggacttgaattatacttatcagtt |
37964448 |
T |
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| Q |
113 |
atatgactagctcatgaagcacnnnnnnngattatgcatgtattgcagtataattctgaaagttgagaaaatggaaacgcagggaaggatatcttacttg |
212 |
Q |
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| T |
37964449 |
atatgactagctcatgaagcacaaaaaaagattatgcatgtattgcagtataattctgaaagttgagaaaatggaaacgcagggaaggatatcttacttg |
37964548 |
T |
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| Q |
213 |
ttgtacgaagaacatggcccttctctcttgtgagatg |
249 |
Q |
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| T |
37964549 |
ttgtacgaagaacatggcccttctctcttgtgagatg |
37964585 |
T |
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Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 12628793 - 12628613
Alignment:
| Q |
13 |
atactaactgaagaaggaagaaaatgcatgaagcagg----cgatttctctactaaattttctgaaatccaatgtctagaggacttgaattatacttatc |
108 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
12628793 |
atactaactgaagaaggaagaaaatgcatgaaccagatgcacgatttctctactaaattttctgaaatccaatgtttagatgacttgaattatacttata |
12628694 |
T |
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| Q |
109 |
agttatatgactagctcatgaagcacnnnnnnngattatgcatgtattgcagtataattctgaaagttgagaaaatggaaa |
189 |
Q |
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| T |
12628693 |
agttatatgactagctcgtgaatcacaaaaaaagattatgcatgtactgcagtagaattctgaaagttgagaaaatggaaa |
12628613 |
T |
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