View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15852_low_1 (Length: 393)
Name: NF15852_low_1
Description: NF15852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15852_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 47118952 - 47119316
Alignment:
| Q |
12 |
atgaatcttacacatgtgttccttaattggaacaaaaatatagaattttgatcttgtttttattagtcagttcgctcaattcaagaacaacctcaatctt |
111 |
Q |
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| T |
47118952 |
atgaatgttacatatatgttccttaattggaacaaaaatatagaattttgatcttgtttttattagtcagttcgctcaattcaagaacaacctcaatctt |
47119051 |
T |
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| Q |
112 |
taagaactatatctagtgttcgatcgtctttctctgcaaatactgctgagcaaactccaccacgaatctccacgcatgccaatcagggggagcaacaacc |
211 |
Q |
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| T |
47119052 |
taagaactatatctagtgttcgatcgtctttctctgcaaatactgctgagcaaactccaccacgaatctccacgcatgccaatcagggggagcaacaacc |
47119151 |
T |
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| Q |
212 |
accctctgctcgttcaacaacgacaaatcgaacctttgatttgtctccctctgcacgcagtttagctatgtctcgatcggctcaatccaataatgtgaac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47119152 |
accctctgctcgttcaacaacgacaaatcgaacctttgatttgtctccctctgcacgcagtttagctatgtctcgatcggctcaatccaataatgtgaac |
47119251 |
T |
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| Q |
312 |
aatgatcaacctccatctgctagagcaaactcagggcgtcctagtggactttctaaagtagttcc |
376 |
Q |
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| T |
47119252 |
aatgatcaacctccatctgctagagcaaactcagggcgtcctagtggactttctaaagtagttcc |
47119316 |
T |
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