View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15853_high_5 (Length: 314)
Name: NF15853_high_5
Description: NF15853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15853_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 23305219 - 23305504
Alignment:
| Q |
11 |
cagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagatgtttctatgattgtaatatttgttttgatttggctaaggatcctgttcttac |
110 |
Q |
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| T |
23305219 |
cagagaaaaaggagaatattgatgaaaaggattgtggcaatgatagaggtttctatgattgtaatatttgttttgtattggctaaggatcctgttcttac |
23305318 |
T |
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| Q |
111 |
ttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttagaagatcctctctagctaaagaatgtcct |
210 |
Q |
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| T |
23305319 |
ttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttacaagatcctctctagctaaagaatgtcct |
23305418 |
T |
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| Q |
211 |
gtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattc |
296 |
Q |
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| T |
23305419 |
gtctgcaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattc |
23305504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 23552699 - 23552984
Alignment:
| Q |
11 |
cagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagatgtttctatgattgtaatatttgttttgatttggctaaggatcctgttcttac |
110 |
Q |
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| T |
23552699 |
cagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagaggtttctatgattgtaatatttgttttgatttggctaaggaacctgttcttac |
23552798 |
T |
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| Q |
111 |
ttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttagaagatcctctctagctaaagaatgtcct |
210 |
Q |
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| T |
23552799 |
ttgttgcggtcatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttagaagatcctctctagctaaagaatgtcct |
23552898 |
T |
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| Q |
211 |
gtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattc |
296 |
Q |
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| T |
23552899 |
gtctgcaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgaagttgaggtggttcgtgctgaggattc |
23552984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 23324170 - 23324260
Alignment:
| Q |
66 |
tgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttg |
156 |
Q |
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| T |
23324170 |
tgattgtaatatttgtttagatttggctaagaatcctgtggttacttgttgtggtcatttgttttgttggccatgcttgtatagatggttg |
23324260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 23234976 - 23235073
Alignment:
| Q |
59 |
gtttctatgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttg |
156 |
Q |
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| T |
23234976 |
gtttctatgattgtaatatttgtttaggtttggctaaggatcctgttgtgactcgttgcggtcatttgttctgttggccatgtttatatagatggttg |
23235073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 23235094 - 23235174
Alignment:
| Q |
198 |
taaagaatgtcctgtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggt |
278 |
Q |
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| T |
23235094 |
taaagaatgtcctgtttgcaagggggaagttaaggataagaaggttattcctatatatggtggtgggaatgatgtcgaggt |
23235174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 37120092 - 37120179
Alignment:
| Q |
66 |
tgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatgg |
153 |
Q |
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| T |
37120092 |
tgattgtaatatctgtttggatttggccaaggagcctgttttgacttgctgtggccatctgttttgttggcagtgcttatatcgatgg |
37120179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 10174769 - 10174692
Alignment:
| Q |
60 |
tttctatgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggcc |
137 |
Q |
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| T |
10174769 |
tttctttgattgtaatatttgtttggatattgcaagagatcctgttttgacatgttgtggtcatttgttttgttggcc |
10174692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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