View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15853_low_10 (Length: 217)
Name: NF15853_low_10
Description: NF15853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15853_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 10647538 - 10647477
Alignment:
| Q |
45 |
caaatgctggtgcaagcacaaaaattcgaatcgtgtgaacattgcaaaatcaaaataatgtt |
106 |
Q |
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| T |
10647538 |
caaatgttggtttaagcacaaaaattcgaatcgtgtgaacattacaaaatcaaaataatgtt |
10647477 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 10647444 - 10647377
Alignment:
| Q |
107 |
ataagttgcgaacttaacaaaa-gtacacttaagaactagaagaaatcttcaaaagtcatttttaata |
173 |
Q |
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| T |
10647444 |
ataagttgtgaacttaacaaaaagtatacttaaaaattagaagagatctttagaagtcatttttaata |
10647377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 10647356 - 10647303
Alignment:
| Q |
157 |
aaaagtcatttttaataa-tgaaaagtatatattcgttcaattgatattcttcg |
209 |
Q |
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| T |
10647356 |
aaaagtcagttttaataaattaaaagtatatattcattcaattgatattattcg |
10647303 |
T |
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