View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15853_low_2 (Length: 591)
Name: NF15853_low_2
Description: NF15853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15853_low_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 19 - 577
Target Start/End: Original strand, 42238716 - 42239274
Alignment:
| Q |
19 |
tgaatgacaccatgaaactcaaagtcatgaaatagaggttgataccacaaacaattcaggaacattatacccaatatgtggcagaaagtgaagaggaaat |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
42238716 |
tgaattacaccatgaaactcaaagtcatgaaacagaggttgataccacaaacaattcaggaacattatacccaatatgtggaagaaagtgaagaggaaat |
42238815 |
T |
|
| Q |
119 |
agagattgttatgtttgatgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgactttgaagaaaatgttcaaccagttgat |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42238816 |
agagattgttatgtttgacgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgactttgaagaaaatgttcaaccagttgat |
42238915 |
T |
|
| Q |
219 |
gagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgtgttatcatttgttaggagtaattata |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42238916 |
gagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgtgttatcatttgttaggagtaattata |
42239015 |
T |
|
| Q |
319 |
caatatgcatttgaatatgaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaactatg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
42239016 |
caatatgcatttgaatatgaaggaacaaataatggacgcaaatttttaagcaatgaagagcgtaaggccgtcgcttatcttcttttgcagcacaactatg |
42239115 |
T |
|
| Q |
419 |
aaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42239116 |
aaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagc |
42239215 |
T |
|
| Q |
519 |
aggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggattcaattttgat |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42239216 |
aggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggattcaattttgat |
42239274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 93 - 567
Target Start/End: Original strand, 17649385 - 17649858
Alignment:
| Q |
93 |
tatgtggcagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgact |
192 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
17649385 |
tatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattgcagatatagagtatgact |
17649484 |
T |
|
| Q |
193 |
ttgaagaaaatgttcaaccagttgatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgt |
292 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
17649485 |
ttgaagaaaatgttcaacatgttgatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttatttaatttgattcaaattttt |
17649584 |
T |
|
| Q |
293 |
gttatcatttgttaggagtaattat--acaatatgcatttgaatatgaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtc |
390 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
17649585 |
gttatcatttgttaggagtaattatacacaatatgcatttaaatatgaaggaacagataatggacgcaagtttttaagcaacgaagagtgtaaggccgtt |
17649684 |
T |
|
| Q |
391 |
gcttatcttcttttgcagcacaactatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaac |
490 |
Q |
| |
|
||| |||||||||||||||||| | ||| | || |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
17649685 |
gctcatcttcttttgcagcacagccatgcaagaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaac |
17649784 |
T |
|
| Q |
491 |
atatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggatt |
567 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
17649785 |
gtatttggaagagagaaaaactca---caggagatgtgtctcataggaaaacaacaaattgtgggcgaaaaaggatt |
17649858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 93 - 567
Target Start/End: Original strand, 1328186 - 1328659
Alignment:
| Q |
93 |
tatgtggcagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgact |
192 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
1328186 |
tatgtggaagaaagtgaataggaaatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattgcagatatagagtatgact |
1328285 |
T |
|
| Q |
193 |
ttgaagaaaatgttcaaccagttgatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgt |
292 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||| | |
|
|
| T |
1328286 |
ttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttatttaatttcattcaaattttt |
1328385 |
T |
|
| Q |
293 |
gttatcatttgttaggagtaatt--atacaatatgcatttgaatatgaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtc |
390 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
1328386 |
gttatcatttgttaggagtaattacacacaatatgcatttcaatatgaaggaacagataatggacgcaagtttttaagcaacgaagagcgtaaggccatt |
1328485 |
T |
|
| Q |
391 |
gcttatcttcttttgcagcacaactatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaac |
490 |
Q |
| |
|
||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
1328486 |
gctcatcttcttttgcagcacaaccatgtaggaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaac |
1328585 |
T |
|
| Q |
491 |
atatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggatt |
567 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
1328586 |
gtatttggaagagagcaaaactca---caggagatgtgtctcataggaaaacaacaaattgtgggcgaaaaaggatt |
1328659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 93 - 567
Target Start/End: Complemental strand, 42541369 - 42540896
Alignment:
| Q |
93 |
tatgtggcagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgact |
192 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
42541369 |
tatgtggaagaaagtgaagaggaaatatagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattgcagatatagagtatgact |
42541270 |
T |
|
| Q |
193 |
ttgaagaaaatgttcaaccagttgatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgt |
292 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||| | |
|
|
| T |
42541269 |
ttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttatttaatttcattcaaattttt |
42541170 |
T |
|
| Q |
293 |
gttatcatttgttaggagtaatt--atacaatatgcatttgaatatgaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtc |
390 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
42541169 |
gttatcatttgttaggagtaattacacacaatatgcatttcaatatgaaggaacagataatggacgcaagtttttaagcaacgaagagcgtaaggccatt |
42541070 |
T |
|
| Q |
391 |
gcttatcttcttttgcagcacaactatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaac |
490 |
Q |
| |
|
||| |||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
42541069 |
gctcatcttcttttgcagcacagccatgcaggaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaac |
42540970 |
T |
|
| Q |
491 |
atatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggatt |
567 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
42540969 |
gtatttggaagagagcaaaactca---caggagatgtgtctcataggaaaacaacaaattgtgggcgaaaaaggatt |
42540896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 93 - 472
Target Start/End: Original strand, 4745571 - 4745952
Alignment:
| Q |
93 |
tatgtggcagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgact |
192 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
4745571 |
tatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattgcagatatagagtatgact |
4745670 |
T |
|
| Q |
193 |
ttgaagaaaatgttcaaccagttgatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgt |
292 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
4745671 |
ttgaagaaaatgttcaacatgttgatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttatttaatttgattcaaattttt |
4745770 |
T |
|
| Q |
293 |
gttatcatttgttaggagtaattat--acaatatgcatttgaatatgaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtc |
390 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
4745771 |
gttatcatttgttaggagtaattatacacaatatgcatttcaatatgaaggaacagataatggacgcaagtttttaagcaacgaagagcgtaaggccatt |
4745870 |
T |
|
| Q |
391 |
gcttatcttcttttgcagcacaactatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtct |
472 |
Q |
| |
|
||| |||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
4745871 |
gctcatcttcttttgcagcacagccatgcaggaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtct |
4745952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 32059084 - 32059118
Alignment:
| Q |
29 |
catgaaactcaaagtcatgaaatagaggttgatac |
63 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32059084 |
catgaaactcaaaatcatgaaatagaggttgatac |
32059118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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