View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15853_low_3 (Length: 584)
Name: NF15853_low_3
Description: NF15853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15853_low_3 |
 | |
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| [»] scaffold0001 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 11 - 565
Target Start/End: Complemental strand, 21533682 - 21533128
Alignment:
| Q |
11 |
cacagaccaaatatcaattggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaaa |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533682 |
cacagaccaaatatcaattggagttgaatattggccacattcaaacaataactcaggtgccctataaaaccgagttgctacctgtgacaatagtgtaaaa |
21533583 |
T |
|
| Q |
111 |
gatatttcaggaaccattacattacatctactttcattataagatctactgtcagaaaccattacaatatctcaggtgtttttggaaataaataaagaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533582 |
gatatttcaggaaccattacattacatctactttcattataagatctactctcagaaaccattacaatatctcaggtgtttttggaaataaataaagaca |
21533483 |
T |
|
| Q |
211 |
actactatggttatatcaggaaccattacatctactttcagtataagatcacaaactattccattagaattgaccactcttgtgaataactatttctttt |
310 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21533482 |
actactatggttatatcaggaaccattacatcaactttcattataagatcacaaactattccattataattgaccactcttgtgaataactatttctttt |
21533383 |
T |
|
| Q |
311 |
ttaatccctttcagttactctagttataatgctttcaaatcatgacttgtctctgtgtatatctatgtccaagtgtcctaatcaaaaataacattgtttt |
410 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533382 |
ttaatccctttcagttactctagttgtaatgctttcaaatcatgacttgtctctgtgtatatctatgtccaagtgtcctaatcaaaaataacattgtttt |
21533283 |
T |
|
| Q |
411 |
ccaaaattgacatataactagatctcttacgcaaatggtcatgagttaaattcttgactagtgcgtatagaagagcatctgtttcgagaagagacaactt |
510 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533282 |
ccaaaattgacatataactagatctcttacgcatatggtcatgagttaaattcttgactagtgcgtatagaagagcatctgtttcgagaagagacaactt |
21533183 |
T |
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| Q |
511 |
ataatgcaggaaaggactaactctgacacaacaatttgaatcaccacaactggct |
565 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
21533182 |
ataatgcaggaaagtactaactccgacacaacaatttgaatcaccacaactggct |
21533128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 2072 - 1952
Alignment:
| Q |
11 |
cacagaccaaatatcaattggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||| |||||||||||||| |
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| T |
2072 |
cacagaccaaatatcaattggagttgaatattggccacattcaaacaatatctcaggtgctgtatacaaccgagttgctacctgttacaatagtgtaaaa |
1973 |
T |
|
| Q |
111 |
gatatttcaggaaccattaca |
131 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
1972 |
gacatttcaggaaccattaca |
1952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 9684 - 9564
Alignment:
| Q |
11 |
cacagaccaaatatcaattggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaaa |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || | || |||||||||||||||||| ||||||||||| || |
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| T |
9684 |
cacagaccaaatatctattggagttgaatattggccacattcaaacaatatctcaggtgctgtttacaaccgagttgctacctgttacaatagtgtataa |
9585 |
T |
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| Q |
111 |
gatatttcaggaaccattaca |
131 |
Q |
| |
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|| |||||||||||| ||||| |
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| T |
9584 |
gacatttcaggaaccgttaca |
9564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 23416 - 23296
Alignment:
| Q |
11 |
cacagaccaaatatcaattggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaaa |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || | || |||||||||||||||||| ||||||||||| || |
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| T |
23416 |
cacagaccaaatatctattggagttgaatattggccacattcaaacaatatctcaggtgctgtttacaaccgagttgctacctgttacaatagtgtataa |
23317 |
T |
|
| Q |
111 |
gatatttcaggaaccattaca |
131 |
Q |
| |
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|| |||||||||||| ||||| |
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| T |
23316 |
gacatttcaggaaccgttaca |
23296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 226 - 403
Target Start/End: Original strand, 41574264 - 41574446
Alignment:
| Q |
226 |
tcaggaaccattacatctactttcagtataagatcacaaactattccattagaattgaccactcttgtgaataactatttctttttt--aatccc----- |
318 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| ||| |||||| ||| |||||||||| ||||||||| ||| |||||| ||| | |
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| T |
41574264 |
tcaggaaccattacatctactttcattataagatcacacactc--ccattataatcgaccactcttctgaataacttttttttttttttaattcagtaat |
41574361 |
T |
|
| Q |
319 |
tttcagttactctagttataatgctttcaaatcatgacttgtctctgtgtatatctatgtccaagtgtcctaatcaaaaataaca |
403 |
Q |
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||| | ||||||||| |||||||| ||||||||||||||||||||||||||| |||||| | | | |||||||| |||||||||| |
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| T |
41574362 |
ttttaattactctagctataatgcattcaaatcatgacttgtctctgtgtatgtctatgacaatgcgtcctaataaaaaataaca |
41574446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 325 - 433
Target Start/End: Original strand, 3400811 - 3400919
Alignment:
| Q |
325 |
ttactctagttataatgctttcaaatcatgacttgtctctgtgtatatctatgtccaagtgtcctaatcaaaaataacattgttttccaaaattgacata |
424 |
Q |
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|||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||| | | |||||||||||| | |
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| T |
3400811 |
ttactctatctataatgcattcaaatcatgacttgtctgtgtgtatatctatgtccacgtgtcccaataaaaaataacattatgtgccaaaattgacaaa |
3400910 |
T |
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| Q |
425 |
taactagat |
433 |
Q |
| |
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||| ||||| |
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| T |
3400911 |
taattagat |
3400919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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