View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15853_low_4 (Length: 534)
Name: NF15853_low_4
Description: NF15853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15853_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 11 - 516
Target Start/End: Original strand, 2079563 - 2080068
Alignment:
| Q |
11 |
tagattattctcgcaagatattcctagaaatgccaagtagagattcggttacatggaatagtatgatcagtgcctatggccttcatggatatggagaaca |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2079563 |
tagatgattctcgcaagatattcctagaaatgccaagtagagattcggttacatggaatagtatgatcagtgcctatggccttcatggatatggagaaca |
2079662 |
T |
|
| Q |
111 |
agctttacagcatttttatgaaatgaaagagagaggagtgaagcttgatgcagtcacatttcttgcagttttatctgcttgtaaccatgctggccttgtc |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2079663 |
agctttacaacatttttatgaaatgaaagagagaggagtcaagcttgatgcagtcacatttcttgcagttttatctgcttgtaaccatgctggccttgtc |
2079762 |
T |
|
| Q |
211 |
accgagggacaacagttatttgagcaagtaaatgcagattgtgaaattccaatcaccatagagcattatgcatgcctaattgatcttcatggaaggtcag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2079763 |
accgagggacaacagttatttgagcaagtaaatgcagattgtgaaattccaatcaccatagagcattatgcatgcctaattgatcttcatggaaggtcag |
2079862 |
T |
|
| Q |
311 |
ggaaacttgaagatgctttggaaattctgagaacaatgcctatgaaaccgagtgctagaatatggagctctcttgtatcatcctgtaagcttcatggaag |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2079863 |
ggaaacttgaagatgctttggaaattctgagaacaatgcctatgaaaccgagtgcaagaatatggagctctcttgtatcatcctgtaagcttcatggaag |
2079962 |
T |
|
| Q |
411 |
actagatattgcagaatcactatcatctcagcttataagatcagaaccaaataatgctgctagttacacattgttgagtatgattcacgccgagaagggt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2079963 |
actagatattgcagaatcactatcatctcagcttataagatcagaaccaaataatgctgctagttacacattgttgagtatgattcatgccgagaagggt |
2080062 |
T |
|
| Q |
511 |
cgttgg |
516 |
Q |
| |
|
|||||| |
|
|
| T |
2080063 |
cgttgg |
2080068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University