View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15853_low_5 (Length: 388)
Name: NF15853_low_5
Description: NF15853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15853_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 35612955 - 35613312
Alignment:
| Q |
20 |
gatttcagcaaaaattatcttttgaaattttaatagtagcttct-aaaaaacacgcgtctcttgcctcattgacacataaaccaacaatgtagatgttat |
118 |
Q |
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| T |
35612955 |
gatttcagtaaaaactatctttcgaaactttaatagtagcttctgaaaaaacacacgtctcttgcttcactgacacaaaaacaaacagtgtagatgtcat |
35613054 |
T |
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| Q |
119 |
cgtgcttttgtagacttaccactgatccaaacatgcatatcatcttggagattttaaagattctacttgagattttccacatggacccctcattctaatg |
218 |
Q |
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| T |
35613055 |
cgtgattttatagacttaccgctgatccaaacatgcgtatcatcttggagattttaaagattcaacttgagattttccacatggacccctcattctaatg |
35613154 |
T |
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| Q |
219 |
aaaagcctatattcatcaaaggtcatagcaggatagagggcaggtttatctggctttaccaattccttagctggctctattggaatgtcactttttggat |
318 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |
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| T |
35613155 |
aaaagcctatattcatcaaaggtcatagcagggtagagggcaggtttatctggctttaccaattcttttgctggctctattggaatgtcacttttgggat |
35613254 |
T |
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| Q |
319 |
tgtagaagaaagctaaggaaactctctctttgtgtgagtttgctagtactctgtgctc |
376 |
Q |
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| T |
35613255 |
tgtagaagaaggctaaggaaactctctctttgtgtgagtttgctattactctatgctc |
35613312 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 31789746 - 31789833
Alignment:
| Q |
176 |
agattctacttgagattttccacatggacccctcattctaatgaaaagcctatattcatcaaaggtcatagcaggatagagggcaggt |
263 |
Q |
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|||||| ||||||||||| ||||| || ||||||||||||||||| || || || |||||||||||||| || || ||||| |||||| |
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| T |
31789746 |
agattcaacttgagatttgccacaaggtcccctcattctaatgaagagtctgtactcatcaaaggtcattgctgggtagagtgcaggt |
31789833 |
T |
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