View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15853_low_7 (Length: 314)

Name: NF15853_low_7
Description: NF15853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15853_low_7
NF15853_low_7
[»] chr1 (5 HSPs)
chr1 (11-296)||(23305219-23305504)
chr1 (11-296)||(23552699-23552984)
chr1 (66-156)||(23324170-23324260)
chr1 (59-156)||(23234976-23235073)
chr1 (198-278)||(23235094-23235174)
[»] chr7 (1 HSPs)
chr7 (66-153)||(37120092-37120179)
[»] chr4 (1 HSPs)
chr4 (60-137)||(10174692-10174769)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 23305219 - 23305504
Alignment:
Q  11 cagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagatgtttctatgattgtaatatttgttttgatttggctaaggatcctgttcttac 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  23305219 cagagaaaaaggagaatattgatgaaaaggattgtggcaatgatagaggtttctatgattgtaatatttgttttgtattggctaaggatcctgttcttac 23305318  T
Q  111 ttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttagaagatcctctctagctaaagaatgtcct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23305319 ttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttacaagatcctctctagctaaagaatgtcct 23305418  T
Q  211 gtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattc 296  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23305419 gtctgcaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattc 23305504  T

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Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 23552699 - 23552984
Alignment:
Q  11 cagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagatgtttctatgattgtaatatttgttttgatttggctaaggatcctgttcttac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23552699 cagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagaggtttctatgattgtaatatttgttttgatttggctaaggaacctgttcttac 23552798  T
Q  111 ttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttagaagatcctctctagctaaagaatgtcct 210  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23552799 ttgttgcggtcatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttagaagatcctctctagctaaagaatgtcct 23552898  T
Q  211 gtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattc 296  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  23552899 gtctgcaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgaagttgaggtggttcgtgctgaggattc 23552984  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 23324170 - 23324260
Alignment:
Q  66 tgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttg 156  Q
    |||||||||||||||||| |||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23324170 tgattgtaatatttgtttagatttggctaagaatcctgtggttacttgttgtggtcatttgttttgttggccatgcttgtatagatggttg 23324260  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 23234976 - 23235073
Alignment:
Q  59 gtttctatgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttg 156  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| | ||| |||| || |||||||| ||||||||||| || ||||||||||||    
T  23234976 gtttctatgattgtaatatttgtttaggtttggctaaggatcctgttgtgactcgttgcggtcatttgttctgttggccatgtttatatagatggttg 23235073  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 23235094 - 23235174
Alignment:
Q  198 taaagaatgtcctgtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggt 278  Q
    ||||||||||||||| || ||||| |||||||  |||||||  |||| ||| || ||||||||||||||||| ||||||||    
T  23235094 taaagaatgtcctgtttgcaagggggaagttaaggataagaaggttattcctatatatggtggtgggaatgatgtcgaggt 23235174  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 37120092 - 37120179
Alignment:
Q  66 tgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatgg 153  Q
    |||||||||||| ||||| |||||||| ||||| |||||| | ||||| ||||||||| ||||||||||||  ||||| ||| |||||    
T  37120092 tgattgtaatatctgtttggatttggccaaggagcctgttttgacttgctgtggccatctgttttgttggcagtgcttatatcgatgg 37120179  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 10174769 - 10174692
Alignment:
Q  60 tttctatgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggcc 137  Q
    ||||| |||||||||||||||||| ||| | || |  ||||||||| | || |||||||| |||||||||||||||||    
T  10174769 tttctttgattgtaatatttgtttggatattgcaagagatcctgttttgacatgttgtggtcatttgttttgttggcc 10174692  T

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