View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15853_low_8 (Length: 306)
Name: NF15853_low_8
Description: NF15853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15853_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 121 - 290
Target Start/End: Original strand, 26561299 - 26561468
Alignment:
| Q |
121 |
cattgcaatgcaattgaaccttcagattggatcaaacccaactcaaaagttccaaactttagaggttctagaaagttaaaaagcaaaacccatcacaaaa |
220 |
Q |
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| T |
26561299 |
cattgcaatgcaattgaatcttcagattggatcaaacccaactcaaaagttccaaactttagaggttctagaaagttaaaaagcaaaacccatcacaaaa |
26561398 |
T |
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| Q |
221 |
acaccactataaccttaagctaagatcgaatctaggaatgagatttgtacctaggaggcagtgaatcata |
290 |
Q |
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| T |
26561399 |
acaacactataaccttaagctaagatcgaatctaggaatgagatttgtacctaggaggcagtgaatcata |
26561468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 26561190 - 26561233
Alignment:
| Q |
12 |
acaaccaaaattatatggaattgaatattcactggttcacattc |
55 |
Q |
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| T |
26561190 |
acaaccaaaattatatggaattgaatattcactggttcacattc |
26561233 |
T |
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