View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15854_high_1 (Length: 642)
Name: NF15854_high_1
Description: NF15854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15854_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 39 - 628
Target Start/End: Complemental strand, 39684372 - 39683782
Alignment:
| Q |
39 |
taatgatcgataatttggtcactaaagtataaaatattaaaagtcgattggaaattaggtccacactggtttggaggccaaggaagtggtggtacataag |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39684372 |
taatgatcgataatttggtcactaaagtataaaatattaaaagtcgattggaaattaggtccacactggtttggaggccaaggaagtggtggtacataag |
39684273 |
T |
|
| Q |
139 |
gaggcaaa-tcaatctatatttgttcaattttctcatcctttagatatgaagataatgcttaatgaaggaccttggaattttgagaacatttcttggtgg |
237 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39684272 |
gaggcaaagtcaatctatatttgttcaattttctcatcctttagatatgaagataatgcttaatgaaggaccttggaattttgagaacatttcttggtgg |
39684173 |
T |
|
| Q |
238 |
ttgatagagtgaagattggggttgctattaaggagatactgtaatttcatgtggatttttgggtgcaatttaccaacaggcatgatgttcgagaaggttg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39684172 |
ttgatagagtgaagattggggttgctattaaggagataccgtaatttcatgtggatttttgggtgcaatttaccaacaggcatgatgttcgagaaggttg |
39684073 |
T |
|
| Q |
338 |
gaaaactgttcttaaactacattggtgagtttttagagtatgaaaataataacaggagtagactctagaggaaacatatgcggtttggatttaagattga |
437 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39684072 |
gaaaactgttcttaaactacattggtgaatttttagagtatgaaaataataacaggagtagactctagaggaaatatatgcggtttggatttaagattga |
39683973 |
T |
|
| Q |
438 |
tctccgaagaccattgaagtttgggcatcaaatcaaaatcaatagaggagaacggttcacattgtaattcaagtatgagaaattggaggtgttctgttct |
537 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39683972 |
tctctgaagaccattgaagtttgggcatcaaatcaaaatcaatagaggagaatggttcacattgtaattcaagtatgagaaattggaggtgttctgttct |
39683873 |
T |
|
| Q |
538 |
ttgtatggccacattggtcatacagagaataaatttgttgtccgaattgagattgagaacgatgacgatttcagaaaatgggtgttgattt |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
39683872 |
ttgtatggccacattggtcatacagagaataaatttgttgtccgaattgagatggagaacgatgatgattccaaaaaatgggtgttgattt |
39683782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University