View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15854_high_2 (Length: 590)
Name: NF15854_high_2
Description: NF15854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15854_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 185 - 585
Target Start/End: Original strand, 35501790 - 35502194
Alignment:
| Q |
185 |
tagggtaggtttgtgctttgactatgagtggtta----gttgtacttctatttaaagtgtagctaggctgagtgattcaaaatgaattgcctttactctt |
280 |
Q |
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| T |
35501790 |
tagggtaggtttgtgctttgactatgagtggttagttagttgtacttctatttaaagtgtagctaggctgagtgattcaaaatgaattgcctttactctt |
35501889 |
T |
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| Q |
281 |
tttctttggttacataaaatttagggtgagtcgaaggtgtttcggtgtacggtagagaaaccttatggcacaaatataaacttaattttgctctaactac |
380 |
Q |
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| T |
35501890 |
tttctttggttacataaaatttagggtgagtccaaggtgtttcggtgtacggtagagtaaccttatggcacaaatataaacttaattttgctctaactac |
35501989 |
T |
|
| Q |
381 |
attggtgtgacacggttggttgataactgagtcttaatattactctaactaaactaacatggtgtggcgcagtttgtaggtaatcgagtctcttaagcat |
480 |
Q |
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| T |
35501990 |
attggtgtgacacggttggttgataaatgagtcttaatattactctaactaaactaacatggtgtgacgcagtttgtaggtaatcgagtctcttaagcat |
35502089 |
T |
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| Q |
481 |
gtggctaggggattggtcctaggaatagaagagcatatattggggaatgtcaacccctatagtacctcaaagaattactctctaattgcaagtcgtgggt |
580 |
Q |
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| T |
35502090 |
gtggctaggggattggtcctaggaatagaagagcatatattggggaatgtcaacccctatagtacctcaaagaattactctctaattgcaagtcgtgggt |
35502189 |
T |
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| Q |
581 |
ctctg |
585 |
Q |
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| T |
35502190 |
ctctg |
35502194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 35501624 - 35501725
Alignment:
| Q |
19 |
gatgggccgtacaccggtgtagcagatggtaggattttgaagtgggaaggtgagaaacgtggttggactcaatttgctgtcaccagttccaataggtaac |
118 |
Q |
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| T |
35501624 |
gatggtccgtacaccggtgtagcagatggtaggattttgaagtgggaaggtgaggaacgtggttggactcaatttgctgtcaccagttccaataggtaac |
35501723 |
T |
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| Q |
119 |
ag |
120 |
Q |
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| T |
35501724 |
ag |
35501725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 35509536 - 35509634
Alignment:
| Q |
19 |
gatgggccgtacaccggtgtagcagatggtaggattttgaagtgggaaggtgagaaacgtggttggactcaatttgctgtcaccagttccaataggtaa |
117 |
Q |
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| T |
35509536 |
gatgggccgtacaccggcgtggcggatggtcggattttaaaatgggaaggagaggaacgtggttggactgaatttgctgtcaccagctccaataggtaa |
35509634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 35487151 - 35487240
Alignment:
| Q |
28 |
tacaccggtgtagcagatggtaggattttgaagtgggaaggtgagaaacgtggttggactcaatttgctgtcaccagttccaataggtaa |
117 |
Q |
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| T |
35487151 |
tacaccggcgtggcggatggtcggattttgaagtggaaaggaaagaaacgtggttggactgaatttgctgtcacgagttccaataggtaa |
35487240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 40157157 - 40157246
Alignment:
| Q |
28 |
tacaccggtgtagcagatggtaggattttgaagtgggaaggtgagaaacgtggttggactcaatttgctgtcaccagttccaataggtaa |
117 |
Q |
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| T |
40157157 |
tacaccggcgtggcggatggtcggattttgaagtatgaaggggaggaacgaggttggactgaatttgctgtcacgagttccaataggtaa |
40157246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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