View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15854_low_3 (Length: 505)
Name: NF15854_low_3
Description: NF15854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15854_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 262 - 496
Target Start/End: Complemental strand, 22684348 - 22684112
Alignment:
| Q |
262 |
agaaacacatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgc |
359 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22684348 |
agaaacacatcatagcctacaactgtaattgcggctgcaatataaaggttttagagatctcctaaacgccaattgtgaccgcaattgcagccacatttgc |
22684249 |
T |
|
| Q |
360 |
tcaagttttgtagcatattggtgtcttacttgccaatatgttactcactatcgcaggaagcaagttataatgacaaagagaatgaatttgcagtgtttaa |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684248 |
tcaagttttgtagcatattggtgtcttacttgccaatatgttactcactatcgctggaagcaagttataatgacaaagagaatgaatttgcagtgtttaa |
22684149 |
T |
|
| Q |
460 |
ttaatgctttatttgtttaaatttaccacaggttctg |
496 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
22684148 |
ttaatgctttatttgttcaaatttaccacaggttctg |
22684112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 22684592 - 22684389
Alignment:
| Q |
19 |
attactacctttgtgcgttgctctattgcacttacacttctgatgaaa-gcgtctctggtgtctgacatggatacgacatcgatcaacacatgtgattac |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
22684592 |
attactacctttgtgcgttgctctgttgcacttacacttctgatgaaaagtgtctctggtgtctgacatggatacgacatcgatcgatacatgtgattac |
22684493 |
T |
|
| Q |
118 |
gttcaattaactcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtgttgatttgccgtgtccttgtttgtggaagtgcttcataggtgc |
217 |
Q |
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| T |
22684492 |
gttcaattaactcatattttcaaatttttcacccgtgtcaatgtgtctgtgtcagtgtcgatttgtcgtgtccttgtttgtggaagtgcttcataggtgc |
22684393 |
T |
|
| Q |
218 |
attg |
221 |
Q |
| |
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|||| |
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| T |
22684392 |
attg |
22684389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 369
Target Start/End: Complemental strand, 22695831 - 22695722
Alignment:
| Q |
262 |
agaaacacatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgc |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||| || |||||||||||||||| ||||||||||| |
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| T |
22695831 |
agaaacacatcatagcctacaactgtaattgcggctgcgatataaaggttttagagatctcctctacggcagttgtgaccgcaattgcagccacatttgc |
22695732 |
T |
|
| Q |
360 |
tcaagttttg |
369 |
Q |
| |
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| |||||||| |
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| T |
22695731 |
taaagttttg |
22695722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 496
Target Start/End: Complemental strand, 22695596 - 22695522
Alignment:
| Q |
423 |
gttataatgacaaagagaat-gaatttgcagtgtttaattaatgctttatttgtttaaatttaccacaggttctg |
496 |
Q |
| |
|
|||||||||||||||| ||| || ||| | |||| ||||| |||||||||||||| |||||||| ||||||||| |
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| T |
22695596 |
gttataatgacaaagacaatagatttttcggtgtgtaattgatgctttatttgttcaaatttactgcaggttctg |
22695522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 23423220 - 23423271
Alignment:
| Q |
104 |
acacatgtgattacgttcaattaactcatattttcaaatttttcaccaatgtc |
156 |
Q |
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| T |
23423220 |
acacatgtgattactttcaattaaatcatttattcaaattttt-accaatgtc |
23423271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 14782856 - 14782896
Alignment:
| Q |
106 |
acatgtgattacgttcaattaactcatattttcaaattttt |
146 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||||| |
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| T |
14782856 |
acatgtgattacgttcaattaattcattttttcaaattttt |
14782896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 9198640 - 9198680
Alignment:
| Q |
106 |
acatgtgattacgttcaattaactcatattttcaaattttt |
146 |
Q |
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||||||||||| |||||||||| |||| ||||||||||||| |
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| T |
9198640 |
acatgtgattatgttcaattaattcattttttcaaattttt |
9198680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 10764084 - 10764126
Alignment:
| Q |
104 |
acacatgtgattacgttcaattaactcatattttcaaattttt |
146 |
Q |
| |
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||||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
10764084 |
acacatgcgattacgttcaattaattcattttttcaaattttt |
10764126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 26456492 - 26456448
Alignment:
| Q |
106 |
acatgtgattacgttcaattaactcatattttcaaatttttcacca |
151 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||| |||| |
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| T |
26456492 |
acatgtgattgcgttcaattaactcat-ttttcaaatttttaacca |
26456448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 14227036 - 14226973
Alignment:
| Q |
110 |
gtgattacgttcaattaactcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtg |
174 |
Q |
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||||||| |||||||||| |||| ||||||||||||| | |||||||||||| |||||||||| |
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| T |
14227036 |
gtgattatgttcaattaattcattttttcaaattttt-attgatgtcaatgtgtatgtgtcagtg |
14226973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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