View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15854_low_4 (Length: 432)
Name: NF15854_low_4
Description: NF15854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15854_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 29299329 - 29298925
Alignment:
| Q |
9 |
caagaatattactatttatcgccattgctgctttaagaatttgattagcacaatcccttttctctgtaaggtgtttccttgacttctcagagaggccacc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29299329 |
caagaatattactatttatcgccattgctgctttaagaatttgattagcacaatcccttttctctgtaaggtgtttccttgacttctcagagaggccacc |
29299230 |
T |
|
| Q |
109 |
agggagaacacaaggaactggcaaccaccatttctcgtctttccttggagcaatccttcgaaacgaggctgcacgtaaacgaggcgaacttgctgatacg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29299229 |
agggagaacacaaggaactggcaaccaccatttctcgtctttcctttgagcaatccttcgaaacgaggctgcacgtaaacgaggcgaacttgctgatacg |
29299130 |
T |
|
| Q |
209 |
ttctctgcataccagaattcagtatcctcaaaagaatctaatatttcctgtaaacaacattgtcatgtttatcagtcacaagaacttgatgaaaaactta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29299129 |
ttctctgcataccagaattcagtatcctcaaaagaatctaatatttcctgtaaacaacattgtcatgtttatcagtcacaagaacttgatgaaaaactta |
29299030 |
T |
|
| Q |
309 |
gttctcacatgaaagaagcaaatgatgtctttcttactataagcattgtgtcaagcttctgcagtgctgggagattgatataaatatctgaccttggcct |
408 |
Q |
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|||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29299029 |
gttctcgcatgaaagaagcaaatgagg--tttcttactataagcattgtgtcaagcttctgcagtgctgggagattgatataaatatctgaccttggcct |
29298932 |
T |
|
| Q |
409 |
gcttttc |
415 |
Q |
| |
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||||||| |
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| T |
29298931 |
gcttttc |
29298925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 11475743 - 11475903
Alignment:
| Q |
20 |
ctatttatcgccattgctgctttaagaatttgattagcacaatcccttttctctgtaaggtgtttccttgacttctcagagaggccaccagggagaacac |
119 |
Q |
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|||||||| ||||| ||||||||| ||||||||||||||||||| |||||||| | | || ||||||||||| |||||||||||||||| | |||||| |
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| T |
11475743 |
ctatttattgccatagctgctttatgaatttgattagcacaatctcttttctcaatcaaatgcttccttgacttatcagagaggccaccagtgtgaacac |
11475842 |
T |
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| Q |
120 |
aaggaactggcaaccaccatttctcgtctttccttggagcaatccttcgaaacgaggctgc |
180 |
Q |
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||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||| |||| |
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| T |
11475843 |
aaggaactggcaaccaccatttctcatcttttctttgagcaataattcgaaacgagcctgc |
11475903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 11476094 - 11476159
Alignment:
| Q |
340 |
tcttactataagcattgtgtcaagcttctgcagtgctgggagattgatataaatatctgaccttgg |
405 |
Q |
| |
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||||||||||||||| |||||||||||||| || ||||| || || ||||||||||||| |||||| |
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| T |
11476094 |
tcttactataagcatcgtgtcaagcttctgtagagctggaaggtttatataaatatctgcccttgg |
11476159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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