View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15854_low_5 (Length: 369)
Name: NF15854_low_5
Description: NF15854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15854_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 9560973 - 9560813
Alignment:
| Q |
15 |
aattctaacttcaaatcgttaaaatcattcaaatcaacaaaccgaactaaactatattcacgatcaattatcaaagattcaaatctcaatttaccgttta |
114 |
Q |
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| T |
9560973 |
aattctaacttcaaatcgttaaaatcattcaaattaacaaaccgaactaaactacattcacgatcaattatcaaagattcaaatctcaatttaccgttta |
9560874 |
T |
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| Q |
115 |
agctctctgcaatttcacaaatcaaccgaaacaagaacactaacttcaaactgttcaaatc |
175 |
Q |
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| T |
9560873 |
agctctctacaatttcacaaatcaaccgaaacaagaacactaacttcaaactgttcaaatc |
9560813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 9560706 - 9560608
Alignment:
| Q |
280 |
cctttctacaatttcatagatcaatcaaagcagtaatccgaagttcaa---------atcaaacattaattgatctacaaggaagagcaaactaatttc |
369 |
Q |
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| T |
9560706 |
cctttctacaatttcatagatcaatcaaagcagtaatccgaagttcaaatcattcaaatcaaacattaattgatctaaaaggaagagaaaactaatttc |
9560608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 9560755 - 9560709
Alignment:
| Q |
59 |
aactaaactatattcacgatcaattatcaaagattcaaatctcaatt |
105 |
Q |
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| T |
9560755 |
aactaaaccaaattcacgatcaatcatcaacgattcaaatctcaatt |
9560709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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