View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15854_low_6 (Length: 338)

Name: NF15854_low_6
Description: NF15854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15854_low_6
NF15854_low_6
[»] chr7 (10 HSPs)
chr7 (10-288)||(39569425-39569703)
chr7 (10-282)||(39344106-39344378)
chr7 (10-281)||(39358682-39358953)
chr7 (10-280)||(39552595-39552865)
chr7 (10-281)||(39543371-39543642)
chr7 (10-286)||(39332836-39333112)
chr7 (288-321)||(39949304-39949337)
chr7 (288-321)||(39953696-39953729)
chr7 (60-131)||(39585472-39585543)
chr7 (63-131)||(39579142-39579210)
[»] chr8 (3 HSPs)
chr8 (285-321)||(30049846-30049882)
chr8 (287-321)||(30045443-30045477)
chr8 (291-321)||(7162798-7162828)
[»] chr3 (3 HSPs)
chr3 (285-321)||(36028804-36028840)
chr3 (288-321)||(22361336-22361369)
chr3 (290-321)||(22365723-22365754)
[»] chr4 (3 HSPs)
chr4 (287-321)||(3946095-3946129)
chr4 (288-321)||(3941696-3941729)
chr4 (55-127)||(2882142-2882214)
[»] scaffold1453 (1 HSPs)
scaffold1453 (288-321)||(147-180)
[»] chr5 (3 HSPs)
chr5 (288-321)||(196152-196185)
chr5 (288-321)||(200538-200571)
chr5 (285-321)||(32800642-32800678)
[»] chr2 (2 HSPs)
chr2 (286-321)||(1330886-1330921)
chr2 (55-88)||(44238464-44238497)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 39569703 - 39569425
Alignment:
Q  10 ggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttt 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39569703 ggaggagcagtgatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttt 39569604  T
Q  110 tgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttgaa 209  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39569603 tgcgcgtttgaggaaaggtttgctcacttcacttcaaggggaagccgttgagattgatattgagaagcttgggctgcaagaaagaaaagatttgcttgaa 39569504  T
Q  210 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttcagatttt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39569503 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttcagatttt 39569425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 39344106 - 39344378
Alignment:
Q  10 ggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttt 109  Q
    |||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  39344106 ggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttt 39344205  T
Q  110 tgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttgaa 209  Q
    || ||||||||||||||||||||| ||||| |||||||||||||||   ||| |||||||||||||||||||| |||||| |||||||||||||||||||    
T  39344206 tgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaagaaaagatttgcttgaa 39344305  T
Q  210 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttca 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39344306 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgcatggacaggttca 39344378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 39358682 - 39358953
Alignment:
Q  10 ggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttt 109  Q
    |||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  39358682 ggaggaacagtgatgctgctgagatcttttcaaattcttttcaccaagaagatgatgaagaatctcttaaatgggctgcaattcagaagcttcctacttt 39358781  T
Q  110 tgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttgaa 209  Q
    || ||||||||||||||||||||| ||||| |||||||||||||||   ||| |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  39358782 tgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagaaagaaaagatttacttgaa 39358881  T
Q  210 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttc 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39358882 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggataggttc 39358953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 39552865 - 39552595
Alignment:
Q  10 ggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttt 109  Q
    |||||| ||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  39552865 ggaggaacagtgatgctgctgagatcttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctacttt 39552766  T
Q  110 tgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttgaa 209  Q
    || ||||||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||||| |||||| ||||||||||||||||||| ||||||    
T  39552765 tgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccactgagatcgatgttgagaaccttgggttgcaagaaagaaaagatttacttgaa 39552666  T
Q  210 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggtt 280  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||| ||||||||    
T  39552665 agacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggtt 39552595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 39543642 - 39543371
Alignment:
Q  10 ggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttt 109  Q
    |||||| ||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||    
T  39543642 ggaggaacagtgatgctgctgagattttttctaattcttttcgccaagaagatgatgaagaagctcttaaatgggctgccattcagaaacttcctacttt 39543543  T
Q  110 tgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttgaa 209  Q
    ||||||||| ||||||||||||||| |||  || ||||||||||||  |||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  39543542 tgcacgtttaaggaaaggtttgctctctttgctgcaaggggaagccactgagatcgatgttgagaagcttgggttgcaagaaagaaaagatttacttgaa 39543443  T
Q  210 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttc 281  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||    
T  39543442 agacttgttagacttgctgaagaggacaatgagaagtttttgctcaaactcaaggatcgaatcgacaggttc 39543371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 39332836 - 39333112
Alignment:
Q  10 ggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttt 109  Q
    |||||| ||| |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  39332836 ggaggaacagtgatgcagccgagattttttcaaattctttccaccaaggagatgatgaagaagctcttaaatgggctgcaattcagatccttcctacttt 39332935  T
Q  110 tgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttgaa 209  Q
    || ||||||||||||||||||||||||||| |||||||| | | || | ||||||||||||||||| |||||| |||||||||  ||||||||||| |||    
T  39332936 tgaacgtttgaggaaaggtttgctcacttcacttcaaggtggaaccatcgagattgatgttgagaaccttgggatgcaagaaaagaaagatttgctcgaa 39333035  T
Q  210 agacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttcagatt 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  39333036 agacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggatt 39333112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 39949304 - 39949337
Alignment:
Q  288 tgttagcttttgtaatggcagcagaagcaataag 321  Q
    ||||||||||||||||||||||||||||||||||    
T  39949304 tgttagcttttgtaatggcagcagaagcaataag 39949337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 39953696 - 39953729
Alignment:
Q  288 tgttagcttttgtaatggcagcagaagcaataag 321  Q
    ||||||||||||||||||||||||||||||||||    
T  39953696 tgttagcttttgtaatggcagcagaagcaataag 39953729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 39585543 - 39585472
Alignment:
Q  60 gatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttttgcacgtttgaggaaaggtttg 131  Q
    ||||||||||| ||| | || ||||||||||||||||  ||||| ||| ||||||| ||||||| |||||||    
T  39585543 gatgatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttg 39585472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 39579210 - 39579142
Alignment:
Q  63 gatgaagaagctcttaagtgggctgcaattcagaatcttcctacttttgcacgtttgaggaaaggtttg 131  Q
    |||||||| ||| | || ||||||||||||||||  ||||| ||| ||||||| ||||||| |||||||    
T  39579210 gatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttg 39579142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 30049882 - 30049846
Alignment:
Q  285 ttttgttagcttttgtaatggcagcagaagcaataag 321  Q
    |||||||||||||||||||||||||||||||||||||    
T  30049882 ttttgttagcttttgtaatggcagcagaagcaataag 30049846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 321
Target Start/End: Complemental strand, 30045477 - 30045443
Alignment:
Q  287 ttgttagcttttgtaatggcagcagaagcaataag 321  Q
    |||||||||||||||||||||||||||||||||||    
T  30045477 ttgttagcttttgtaatggcagcagaagcaataag 30045443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Complemental strand, 7162828 - 7162798
Alignment:
Q  291 tagcttttgtaatggcagcagaagcaataag 321  Q
    |||||||||||||||||||||||||||||||    
T  7162828 tagcttttgtaatggcagcagaagcaataag 7162798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 36028804 - 36028840
Alignment:
Q  285 ttttgttagcttttgtaatggcagcagaagcaataag 321  Q
    |||||||||||||||||||||||||||||||||||||    
T  36028804 ttttgttagcttttgtaatggcagcagaagcaataag 36028840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 22361369 - 22361336
Alignment:
Q  288 tgttagcttttgtaatggcagcagaagcaataag 321  Q
    ||||||||||||||||||||||||||||||||||    
T  22361369 tgttagcttttgtaatggcagcagaagcaataag 22361336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 290 - 321
Target Start/End: Complemental strand, 22365754 - 22365723
Alignment:
Q  290 ttagcttttgtaatggcagcagaagcaataag 321  Q
    ||||||||||||||||||||||||||||||||    
T  22365754 ttagcttttgtaatggcagcagaagcaataag 22365723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 321
Target Start/End: Complemental strand, 3946129 - 3946095
Alignment:
Q  287 ttgttagcttttgtaatggcagcagaagcaataag 321  Q
    |||||||||||||||||||||||||||||||||||    
T  3946129 ttgttagcttttgtaatggcagcagaagcaataag 3946095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 3941729 - 3941696
Alignment:
Q  288 tgttagcttttgtaatggcagcagaagcaataag 321  Q
    ||||||||||||||||||||||||||||||||||    
T  3941729 tgttagcttttgtaatggcagcagaagcaataag 3941696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 2882142 - 2882214
Alignment:
Q  55 aagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttttgcacgtttgaggaaagg 127  Q
    |||| |||||||||||||||||||| ||||||||| || | || || ||||||| |   ||||||||||||||    
T  2882142 aagatgatgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaagg 2882214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1453 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1453
Description:

Target: scaffold1453; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 180 - 147
Alignment:
Q  288 tgttagcttttgtaatggcagcagaagcaataag 321  Q
    ||||||||||||||||||||||||||||||||||    
T  180 tgttagcttttgtaatggcagcagaagcaataag 147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 196152 - 196185
Alignment:
Q  288 tgttagcttttgtaatggcagcagaagcaataag 321  Q
    ||||||||||||||||||||||||||||||||||    
T  196152 tgttagcttttgtaatggcagcagaagcaataag 196185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 200538 - 200571
Alignment:
Q  288 tgttagcttttgtaatggcagcagaagcaataag 321  Q
    |||||||||||||||||| |||||||||||||||    
T  200538 tgttagcttttgtaatggtagcagaagcaataag 200571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 32800678 - 32800642
Alignment:
Q  285 ttttgttagcttttgtaatggcagcagaagcaataag 321  Q
    ||||||||||||||| || ||||||||||||||||||    
T  32800678 ttttgttagcttttgcaaaggcagcagaagcaataag 32800642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 1330921 - 1330886
Alignment:
Q  286 tttgttagcttttgtaatggcagcagaagcaataag 321  Q
    |||||||||||||||||||||||||||| |||||||    
T  1330921 tttgttagcttttgtaatggcagcagaaacaataag 1330886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 44238497 - 44238464
Alignment:
Q  55 aagaagatgatgaagaagctcttaagtgggctgc 88  Q
    ||||||||||||||||||||||||| ||||||||    
T  44238497 aagaagatgatgaagaagctcttaaatgggctgc 44238464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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