View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15855_high_3 (Length: 651)
Name: NF15855_high_3
Description: NF15855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15855_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 13 - 633
Target Start/End: Original strand, 41672931 - 41673551
Alignment:
| Q |
13 |
gcagagatctctataactaatcaattccacccccctaacaaattgagcattaatatttgtctgcaaaactaaagtaaaaaatcattcatgtactttgctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41672931 |
gcagagatctctataactaatcaattccacccccctaacaaattgagcattaatatttgtctgcaaaactaaagtaaaaaatcattcatgtactttgctt |
41673030 |
T |
|
| Q |
113 |
aaccttttaacatatttgatgcttggtgactacacaaaaacggactcaattcatgcattgcatagaaagccatgtgcaaaggaatgactttctgaagaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41673031 |
aaccttttaacatatttgatgcttggtgactacacaaaaacggactcaattcatgcattgcatagaaagccacgtgcaaaggaatgactttctgaagaat |
41673130 |
T |
|
| Q |
213 |
cattaccatatagtgttgactgtttacaattttgtttgcagcaactgcagaagcaatatttgcacatagacccaaatgttgatgatagtgaaagttacag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41673131 |
cattaccatatagtgttgactgtttacaattttgtttgcagcaactgcagaagcaatatttgcacatagacccaaatgttgatgatagtgaaagttacag |
41673230 |
T |
|
| Q |
313 |
caatgagcgtgaaagagcccaattggattggaactggttggaacgttggatgttatcacaatcaaacaatgttaggcccttagggttggggccacttgag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41673231 |
caatgagcgtgaaagagcccaattggattggaactggttggaacgttggatgttatcacaatcaaacaatgttaggcccttagggttggggccacttgag |
41673330 |
T |
|
| Q |
413 |
accccaccatatacacccactgatgacatgtctgaagaaaaaacagttgaaatggacatggttgcaccacgagactcaatccatgcaaacatgggcctca |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41673331 |
accccaccatatacacccactgatgacatgtctgaagaaaaaacagttgaaatggacatggttgcaccacgagactcaatccatgcaaacatgggcctca |
41673430 |
T |
|
| Q |
513 |
tgaaccaagaatttcgtgatttaagtccaatctctaaacaccaccaacgacaccacagtggaggtgtacctagctatatggccccaacacagtctgcaaa |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41673431 |
tgaaccaagaatttcgtgatttaagtccaatctctaaacaccaccaacgacaccacagtggaggtgtacctagctatatggccccaacacagtctgcaaa |
41673530 |
T |
|
| Q |
613 |
ggccaagattaagagtcaagg |
633 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
41673531 |
ggccaagattaaaagtcaagg |
41673551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University