View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15855_high_5 (Length: 331)
Name: NF15855_high_5
Description: NF15855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15855_high_5 |
 | |
|
| [»] scaffold0436 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0053 (1 HSPs) |
| | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
|
| [»] scaffold0639 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5506278 - 5506502
Alignment:
| Q |
1 |
aaacatcatagtgtttaaacttcataatttaaagacattaaagatttaacctcaaccatagtgttacagatcagagcacgtatctgttcgactacttaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||| ||||||| ||| |
|
|
| T |
5506278 |
aaacatcatagtgtttaaacttcataatttaaagacattaaaggtttaaccccgaccatagtgttacagatcagagcacgtatttgtttgactactcaat |
5506377 |
T |
|
| Q |
101 |
atcacaaataatagctacggaaatatatccctgtcaccaccttctagcgtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtaca |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5506378 |
atcacaaataatagctac-gaaatatatctctgtcgccaccttctagcatcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtaca |
5506476 |
T |
|
| Q |
201 |
gacacgaaaatacacgaataatagca |
226 |
Q |
| |
|
| ||||||||| |||||| ||||||| |
|
|
| T |
5506477 |
gtcacgaaaatgcacgaacaatagca |
5506502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 16477462 - 16477620
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatat-ccctgtcaccaccttct-agcgtcccgcaa |
157 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| | ||| || ||||||||| ||| || ||||| |
|
|
| T |
16477462 |
agtgttacaaatcagagcacgtatctattcgactacttaatatctcaaataatagctacggttgtatgtcccccatcgccaccttctaagcatctcgcaa |
16477561 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggt-acagacacgaaaatacac |
215 |
Q |
| |
|
| ||||||||||||| ||| | ||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
16477562 |
atctaaagctcctcgccctgaatatctgtaccccaagggtcacagacaccaaaatacac |
16477620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 9695176 - 9695007
Alignment:
| Q |
35 |
acattaaagatttaacctcaaccatagtgttacagatcagagcacgtatctgttcgactacttaatatcacaa-ataatagctacggaaatatatccctg |
133 |
Q |
| |
|
||||| || |||| ||||||||| ||||||||||||||||||||||| | ||||||||| ||| || | | ||||||||||||||| |||||| || |
|
|
| T |
9695176 |
acattcaacatttgacctcaaccctagtgttacagatcagagcacgtgattattcgactacataa-ataattagataatagctacggaagtatatctctt |
9695078 |
T |
|
| Q |
134 |
tcaccaccttctag-cgtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagaca |
204 |
Q |
| |
|
|| |||||||||| ||||||||||| ||||||||||||||||| ||| | ||||||||||| ||||||||| |
|
|
| T |
9695077 |
tcgccaccttctaaacgtcccgcaaa-ctaaagctcctcgtcctgagtgtatgtaccccaagagtacagaca |
9695007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 43291 - 43144
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataa-tagctacggaaatatatccctgtcaccaccttcta-gcgtcccgcaa |
157 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||||| | | | |||| |||||||||| ||||| | || |||||||||| ||||||||||| |
|
|
| T |
43291 |
agtgttacagatcagagcacgcatttattcgactacttattgataaagataaatagctacggaggtatattctcgttgccaccttctaagcgtcccgcaa |
43192 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggtacagacac |
205 |
Q |
| |
|
|||||| |||||| |||| |||| ||||||||| | |||||||||| |
|
|
| T |
43191 |
ggctaaatctcctcttcctgtgtatctgtaccccaggagtacagacac |
43144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 54 - 215
Target Start/End: Complemental strand, 24432391 - 24432228
Alignment:
| Q |
54 |
aaccatagtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatat-ccctgtcaccaccttct-agcgtc |
151 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| | ||| || |||||||| ||| || |
|
|
| T |
24432391 |
aaccctagtgttacagatcagagcacgtatctattcgactacttaatatcccaaataatagctacggtggtatgtcccccatcgtcaccttctaagcatc |
24432292 |
T |
|
| Q |
152 |
ccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaatacac |
215 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
24432291 |
tcgcaaatctaaagctcctcgtcctgaatatctgtaccccaagggtacagacaccaaaatacac |
24432228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 23211682 - 23211525
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatat-ccctgtcaccaccttct-agcgtcccgcaa |
157 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| | ||| || ||||||||| | | || ||||| |
|
|
| T |
23211682 |
agtgttacagatcagagcacgtatctattcgactacttaatatcccaaataatagctacggtggtatgtcccccatcgccaccttctaatcatctcgcaa |
23211583 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaatacac |
215 |
Q |
| |
|
| ||||||||||||| ||| | ||||||||||||||||||||| |||| || |||||| |
|
|
| T |
23211582 |
atctaaagctcctcgccctgaatatttgtaccccaagggtacatacaccaacatacac |
23211525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 205
Target Start/End: Original strand, 23843963 - 23844120
Alignment:
| Q |
45 |
tttaacctcaaccatagtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatatccctgtcaccaccttc |
144 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||||| || | ||||||||||||||| | |||||||||||| ||||| | || |||||||| |
|
|
| T |
23843963 |
tttaaccccaacccaagtgttacaaatcagagcacgcatttattcgactacttaatag----ataaatagctacggaggtatattctcgttgccaccttc |
23844058 |
T |
|
| Q |
145 |
ta-gcgtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagacac |
205 |
Q |
| |
|
|| |||||||||||||||||| |||||| |||| |||| ||||||||||| |||||||||| |
|
|
| T |
23844059 |
taagcgtcccgcaaagctaaatctcctcttcctgtgtatctgtaccccaagagtacagacac |
23844120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 26862858 - 26862681
Alignment:
| Q |
30 |
taaagacattaaagatttaacctcaaccatagtgttacagatcagagcacgtatctgttcgactacttaat-atcacaaataatagctacggaaatatat |
128 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||||||||||||||| || | |||||||||| ||| || | | ||||| ||| || ||||| |
|
|
| T |
26862858 |
taaagacattcaacatttaaccccaacccaagtgttacagatcagagcacacatttattcgactactcaatgataaagataaatagatacagaggtatat |
26862759 |
T |
|
| Q |
129 |
ccctgtcaccaccttct-agcgtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagacac |
205 |
Q |
| |
|
|| || ||||||||| ||||| ||||||||||||| |||||| |||| |||| ||||||| | | |||||||||| |
|
|
| T |
26862758 |
tcccgttgccaccttctaagcgttccgcaaagctaaatctcctcttcctgtgtatctgtaccctaggagtacagacac |
26862681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 23845770 - 23845614
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatatccctgtcaccaccttct-agcgtcccgcaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || ||| |||| || ||||||||| || || |||||| |
|
|
| T |
23845770 |
agtgttacagatcagagcacgtatctattcgactacttaatatcccaaataatagctatggtggtatgtccccatcgccaccttctaagaatctcgcaaa |
23845671 |
T |
|
| Q |
159 |
gctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaatacac |
215 |
Q |
| |
|
||||||||||||||| | | ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
23845670 |
tctaaagctcctcgtcttgaatatttgtaccctaagggtacagacaccaaaatacac |
23845614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 7164686 - 7164495
Alignment:
| Q |
1 |
aaacatcatagtgtttaaacttcataatttaaagacattaaagatttaacctcaaccatagtgttacagatcagagcacgtatctgttcgac--tactta |
98 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| || ||||| | ||||| ||||||| |||||||||||| ||| | ||| || |||||| |
|
|
| T |
7164686 |
aaacatcatagtgcttaaacttcataatttgaagacattcaacgtttaatcccaacccaagtgttatagatcagagcacatatttattctactatactta |
7164587 |
T |
|
| Q |
99 |
atatcacaaat-aatagctacggaaatatatccctgtcaccaccttct-agcgtcccgcaaagctaaagctcctcgtcctaagtatttgtac |
188 |
Q |
| |
|
||||||| | | ||||||| ||| | |||||| |||||||||||||| ||||||||| ||||||||||||| ||||| | ||||| ||||| |
|
|
| T |
7164586 |
atatcaccagtaaatagcttcgggagtatatctttgtcaccaccttctaagcgtcccgtaaagctaaagctcttcgtcgtgagtatatgtac |
7164495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 18451152 - 18451303
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatatccctgtcaccaccttcta-gcgtcccgcaaa |
158 |
Q |
| |
|
||||||||||||||||| || ||| | |||||||||||||||| |||||||||||||||| |||| | |||||||||||||| |||||||||||| |
|
|
| T |
18451152 |
agtgttacagatcagagaacatatttattcgactacttaatattgcaaataatagctacgggg-tataac---gtcaccaccttctaagcgtcccgcaaa |
18451247 |
T |
|
| Q |
159 |
gctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaataca |
214 |
Q |
| |
|
| |||||||| ||| || || || |||||||||||||||||||||| ||| |||| |
|
|
| T |
18451248 |
gttaaagctcaccgttctgagaatctgtaccccaagggtacagacaccaaactaca |
18451303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 13561480 - 13561384
Alignment:
| Q |
108 |
ataatagctacggaaatatatccctgtcaccaccttctag-cgtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagaca |
204 |
Q |
| |
|
||||||||||||||| |||||| || || |||||||||| ||||||||||| ||||||||||||||||| ||| | ||||||||||| ||||||||| |
|
|
| T |
13561480 |
ataatagctacggaagtatatctctttcgccaccttctaaacgtcccgcaaa-ctaaagctcctcgtcctgagtgtatgtaccccaagagtacagaca |
13561384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 18545425 - 18545278
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataa-tagctacggaaatatatccctgtcaccaccttcta-gcgtcccgcaa |
157 |
Q |
| |
|
||||||||||||||||||||| || | ||| |||||| ||| | | |||| |||||||||| ||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
18545425 |
agtgttacagatcagagcacgcatttattcaactactcaatgataaagataaatagctacggatgtatattcctgttgccaccttataagcgtcccgcaa |
18545326 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggtacagacac |
205 |
Q |
| |
|
|||||| ||| || |||| |||||||||||| | | |||||||||| |
|
|
| T |
18545325 |
ggctaaatctcatcttcctgtgtatttgtaccctaggagtacagacac |
18545278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 24494542 - 24494699
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatatccctg-tcaccaccttcta-gcgtcccgcaa |
157 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||| | ||| |||| || |||||||||| || || ||||| |
|
|
| T |
24494542 |
agtgttacaaatcagagcacatatctattcgactacttaatatctcaaataatagctacagtggtatgtcccccatcgccaccttctaagcatctcgcaa |
24494641 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaatacac |
215 |
Q |
| |
|
| ||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24494642 |
atctaaagctcctcgtcctgaatatttgtaccccaagggtacagacaccaaaatacac |
24494699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 34300002 - 34300159
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatatccctg-tcaccaccttcta-gcgtcccgcaa |
157 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| || ||| |||| ||||||||||||| || || ||||| |
|
|
| T |
34300002 |
agtgttacagatcagagcacatatctattcgactacttaatatccaaaataatagctaaggtggtatgtcccccatcaccaccttctaagcatctcgcaa |
34300101 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaatacac |
215 |
Q |
| |
|
| ||||||||||||||||| | ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
34300102 |
atctaaagctcctcgtcctgaatatctgtaccccaagggtacagacaccaaaatacac |
34300159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 19865264 - 19865442
Alignment:
| Q |
30 |
taaagacattaaagatttaacctcaaccata-gtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataa-tagctacggaaatata |
127 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| | |||||| ||||||||||||| || | |||||||||| ||| | | |||| |||||||||| |||| |
|
|
| T |
19865264 |
taaagacattcaaggtttaaccccaaccccaagtgttatagatcagagcacgcatttattcgactactcaatgataaagataaatagctacggaggtata |
19865363 |
T |
|
| Q |
128 |
tccctgtcaccaccttcta-gcgtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagacac |
205 |
Q |
| |
|
| || || |||||||||| ||||||||||| |||||| |||||| |||| |||| ||||||||| | |||||||||| |
|
|
| T |
19865364 |
ttcccgttgccaccttctaagcgtcccgcaaggctaaatctcctcttcctgtgtatctgtaccccaggagtacagacac |
19865442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 22554485 - 22554592
Alignment:
| Q |
108 |
ataatagctacggaaatatatccctgtcaccaccttct-agcgtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacg |
206 |
Q |
| |
|
||||||||||| ||| ||||| ||||| ||||||||| | ||||||||||| ||| ||||| | ||| ||||| | | ||||||||| |||||||||| |
|
|
| T |
22554485 |
ataatagctacagaagtatatttctgtctccaccttctaaacgtcccgcaaa-ctagagctcatagtcttaagtgtctctaccccaagagtacagacacc |
22554583 |
T |
|
| Q |
207 |
aaaatacac |
215 |
Q |
| |
|
| ||||||| |
|
|
| T |
22554584 |
ataatacac |
22554592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 32409698 - 32409855
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatatccc-tgtcaccaccttct-agcgtcccgcaa |
157 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||| |||| || ||||||||| ||| || ||||| |
|
|
| T |
32409698 |
agtgttacagatcagagcacgtatatattcgactacttaatatcccaaataatagctacggtggtatgtcccacatcgccaccttctaagcatctcgcaa |
32409797 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaatacac |
215 |
Q |
| |
|
| ||||||||||||||||| | ||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
32409798 |
atctaaagctcctcgtcctgaatatatgtaccccaagggtaccgacaccaaaatacac |
32409855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 1790 - 1633
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatat-ccctgtcaccaccttct-agcgtcccgcaa |
157 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||| ||| | ||| ||||||| |||| ||| | ||||| |
|
|
| T |
1790 |
agtgttacacatcagagcacgtatttattcgactacttaatatcccaaataatagctacggcggtatgtcccccatcaccacattctaagcatgtcgcaa |
1691 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaatacac |
215 |
Q |
| |
|
| ||||||||||||||||| | ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
1690 |
atctaaagctcctcgtcctgaatatctgtaccccaagggtacagacaccaaaatacac |
1633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 13094 - 12938
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatatccctgtcaccaccttct-agcgtcccgcaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||| ||| |||| || ||||||||| ||| || | |||| |
|
|
| T |
13094 |
agtgttacagatcagagcacgtatctatttgaatacttaatatcccaaataatagctacggtggtatgtccccatcgccaccttctaagcatctcacaaa |
12995 |
T |
|
| Q |
159 |
gctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaatacac |
215 |
Q |
| |
|
| ||||||||||||||||| ||| ||||||||||| ||||| |||| ||||||||| |
|
|
| T |
12994 |
tccaaagctcctcgtcctaaatatctgtaccccaagtgtacatacaccaaaatacac |
12938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 13503517 - 13503657
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatat-ccctgtcaccaccttct-agcgtcccgcaa |
157 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||| | ||| || ||||||||| ||| || ||||| |
|
|
| T |
13503517 |
agtgttacagatcagagcacatatctattcgactacttaatatcccaaataatagctacggtggtatgtcccccatcgccaccttctaagcatctcgcaa |
13503616 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggta |
198 |
Q |
| |
|
| ||||||||||||||||| | ||| |||| |||||||||| |
|
|
| T |
13503617 |
atctaaagctcctcgtcctgaatatctgtagcccaagggta |
13503657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 13295600 - 13295669
Alignment:
| Q |
137 |
ccaccttcta-gcgtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagacac |
205 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||| |||| |||| ||||||||| | |||||||||| |
|
|
| T |
13295600 |
ccaccttctaagcgtcccgcaaggctaaatctcctcttcctgtgtatctgtaccccaggagtacagacac |
13295669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 31466 - 31622
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatatcc-ctgtcaccaccttct-agcgtcccgcaa |
157 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||| |||| ||| | || ||||||||| || || ||||| |
|
|
| T |
31466 |
agtgttacagatcagagcacctatttattcgactacttaatatcccaaataatagctacaatgatatgtccaccatcgccaccttctaagaatcacgcaa |
31565 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaatacac |
215 |
Q |
| |
|
| || |||||||||||||| | ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
31566 |
atct-aagctcctcgtcctgaatatatgtaccccaagggtacagacaccaaaatacac |
31622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 37626 - 37469
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacggaaatatatccctg-tcaccaccttcta-gcgtcccgcaa |
157 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||| ||| |||| || |||| ||||| || || ||||| |
|
|
| T |
37626 |
agtgctacagatcagagcaaaaatctattcgactacttaatatcccaaataatagctacgatggtatgtcccccatcgccacgttctaagcatctcgcaa |
37527 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacgaaaatacac |
215 |
Q |
| |
|
| ||||||||||||||||| | ||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
37526 |
atctaaagctcctcgtcctgaatatctgtaccccaagggtacagactccaaaatacac |
37469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0639 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0639
Description:
Target: scaffold0639; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 4084 - 4024
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataatagctacgg |
120 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
4084 |
agtgttacagatcagagcacaaatctattcgactacttaatatcccaaataatagctacgg |
4024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 92037 - 91932
Alignment:
| Q |
109 |
taatagctacggaaatatatccctgtcaccaccttctag-cgtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacga |
207 |
Q |
| |
|
||||||||||| || |||||| | ||| |||||||||| ||||||||| | ||| ||||||||||||||||| | ||||||||||| |||||||||| | |
|
|
| T |
92037 |
taatagctacgaaagtatatctccgtcgccaccttctaaacgtcccgcaca-ctagagctcctcgtcctaagtgtatgtaccccaagagtacagacacca |
91939 |
T |
|
| Q |
208 |
aaataca |
214 |
Q |
| |
|
|||||| |
|
|
| T |
91938 |
taataca |
91932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 23907501 - 23907608
Alignment:
| Q |
108 |
ataatagctacggaaatatatccctgtcaccaccttctag-cgtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacg |
206 |
Q |
| |
|
||||||| ||||||| |||||| | |||||||||||||| | ||||||||| ||| |||||||| |||| ||| | ||||||||||| |||||||||| |
|
|
| T |
23907501 |
ataatagttacggaagtatatctccgtcaccaccttctaaacatcccgcaaa-ctagagctcctcatcctgagtgtctgtaccccaagagtacagacacc |
23907599 |
T |
|
| Q |
207 |
aaaatacac |
215 |
Q |
| |
|
| ||||||| |
|
|
| T |
23907600 |
ataatacac |
23907608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 32946168 - 32946273
Alignment:
| Q |
108 |
ataatagctacggaaatatatccctgtcaccaccttctagc-gtcccgcaaagctaaagctcctcgtcctaagtatttgtaccccaagggtacagacacg |
206 |
Q |
| |
|
|||||||||||| || |||||| | ||| ||||||| || ||||||||| ||| ||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
32946168 |
ataatagctacgaaagtatatctccgtcgccaccttttaaatgtcccgcaa--ctagagctcctcgtcctgagtgtctgtaccccaagagtacagacacc |
32946265 |
T |
|
| Q |
207 |
aaaataca |
214 |
Q |
| |
|
| |||||| |
|
|
| T |
32946266 |
ataataca |
32946273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 140846 - 140699
Alignment:
| Q |
60 |
agtgttacagatcagagcacgtatctgttcgactacttaatatcacaaataa-tagctacggaaatatatccctgtcaccaccttcta-gcgtcccgcaa |
157 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||| ||| | | |||| |||||||||| ||||| || | |||||||||| ||||||||||| |
|
|
| T |
140846 |
agtgttacagatcagagcacgcatttattcgactactcaatgataaagataaatagctacggaggtatattcccattgccaccttctaagcgtcccgcaa |
140747 |
T |
|
| Q |
158 |
agctaaagctcctcgtcctaagtatttgtaccccaagggtacagacac |
205 |
Q |
| |
|
|||||| |||||| |||| |||| ||||||||| | |||||||||| |
|
|
| T |
140746 |
ggctaaatctcctcttcctgtgtatctgtaccccaggagtacagacac |
140699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 19548358 - 19548326
Alignment:
| Q |
173 |
tcctaagtatttgtaccccaagggtacagacac |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
19548358 |
tcctaagtatttgtaccccacgggtacagacac |
19548326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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