View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15855_low_12 (Length: 213)
Name: NF15855_low_12
Description: NF15855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15855_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 34558558 - 34558735
Alignment:
| Q |
19 |
cttatcactttcagttttcaccattgttagccnnnnnnnngtatgtcaagaatatgtacatgcatcaaattggttgtaa--gacacccgaactatgtatc |
116 |
Q |
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| T |
34558558 |
cttatcactttcagttttcaccattgttagcctttttt--gtatgtcaagaatatgtacatgcatcaaattggttgtaaaagacaccccaactatgtatc |
34558655 |
T |
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| Q |
117 |
-aagggtggatccagactttaggtatatgtgaagctaaaatttcaagggttaaatatccctgtaaatatgtcaacttttc |
195 |
Q |
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| T |
34558656 |
caagggtggatccagactttaggtatatgtgaaactaaaatttcaagggttaaatatccctataaatatgtcaacttttc |
34558735 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 24309793 - 24309839
Alignment:
| Q |
115 |
tcaagggtggatccagactttaggtatatgtgaagctaaaatttcaa |
161 |
Q |
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| T |
24309793 |
tcaagggtggatccagactttaggtacatgcgaagctaaaatttcaa |
24309839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 8034690 - 8034726
Alignment:
| Q |
125 |
atccagactttaggtatatgtgaagctaaaatttcaa |
161 |
Q |
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| T |
8034690 |
atccagactttaggtacatgtggagctaaaatttcaa |
8034726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 7607455 - 7607413
Alignment:
| Q |
119 |
gggtggatccagactttaggtatatgtgaagctaaaatttcaa |
161 |
Q |
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| T |
7607455 |
gggtggatccagactttaggtacatgtggagctaaaatttcaa |
7607413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 1691540 - 1691578
Alignment:
| Q |
123 |
ggatccagactttaggtatatgtgaagctaaaatttcaa |
161 |
Q |
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| T |
1691540 |
ggatcgagactttaggtatatgtggagctaaaatttcaa |
1691578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 33941809 - 33941777
Alignment:
| Q |
123 |
ggatccagactttaggtatatgtgaagctaaaa |
155 |
Q |
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| T |
33941809 |
ggatccagactttaggtatatgtggagctaaaa |
33941777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 2185136 - 2185174
Alignment:
| Q |
123 |
ggatccagactttaggtatatgtgaagctaaaatttcaa |
161 |
Q |
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| T |
2185136 |
ggatccaaactttaggtatatgtggagctaaaatttcaa |
2185174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 36247747 - 36247787
Alignment:
| Q |
118 |
agggtggatccagactttaggtatatgtgaagctaaaattt |
158 |
Q |
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| T |
36247747 |
agggcggatccagactttaggtacatgtggagctaaaattt |
36247787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 41006121 - 41006163
Alignment:
| Q |
119 |
gggtggatccagactttaggtatatgtgaagctaaaatttcaa |
161 |
Q |
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| T |
41006121 |
gggtggatccagactttacgtacatgtggagctaaaatttcaa |
41006163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 6141389 - 6141426
Alignment:
| Q |
124 |
gatccagactttaggtatatgtgaagctaaaatttcaa |
161 |
Q |
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| T |
6141389 |
gatccagactttaggtacatgtggagctaaaatttcaa |
6141426 |
T |
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