View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15855_low_2 (Length: 709)

Name: NF15855_low_2
Description: NF15855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15855_low_2
NF15855_low_2
[»] chr1 (3 HSPs)
chr1 (318-692)||(27724131-27724505)
chr1 (16-291)||(27723830-27724104)
chr1 (31-63)||(50187310-50187342)
[»] chr7 (1 HSPs)
chr7 (31-62)||(43434524-43434555)
[»] chr4 (2 HSPs)
chr4 (31-62)||(23817987-23818018)
chr4 (29-62)||(19388931-19388964)
[»] chr8 (1 HSPs)
chr8 (31-59)||(30585122-30585150)
[»] chr6 (1 HSPs)
chr6 (31-59)||(34406440-34406468)
[»] chr3 (1 HSPs)
chr3 (124-156)||(5037227-5037259)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 318 - 692
Target Start/End: Original strand, 27724131 - 27724505
Alignment:
Q  318 caagttagctcaatggaaataaccattacctcaaacagtgaaggtaatatagtctgtattgtcaacaaagcaaggccaataacgcctgtaacagcgtgag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27724131 caagttagctcaatggaaataaccattacctcaaacagtgaaggtaatatagtctgtattgtcaacaaagcaaggccaataacgcctgtaacagcgtgag 27724230  T
Q  418 gactgcatgcaaacaagatgatataagactatcgctttttgcttgaaaacgaataaacaaatcatctattaggaaatttagaagtaaattaacaagtaat 517  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  27724231 gactgcatgcaaacaagatgatataagagtatcgctttttgcttgaaaatgaataaaaaaatcatttattaggaaatttagaagtaaattaacaagtaat 27724330  T
Q  518 aatcttcggggtcaaagagaagctgctgaatgtaaatacctgtcaaaaatgggtttatctgttgtgagtagagatgttactccaccggtagctccaagag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27724331 aatcttcggggtcaaagagaagctgctgaatgtaaatacctgtcaaaaatgggtttatctgttgtgagtagagatgttactccaccggtagctccaagag 27724430  T
Q  618 caaagaagaaaaacataccagctaaaagcttaggatgcaagtccttggccttagccttttcctcctacaaatatt 692  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27724431 caaagaagaaaaacataccagctaacagcttaggatgcaagtccttggccttggccttttcctcctacaaatatt 27724505  T

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Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 27723830 - 27724104
Alignment:
Q  16 atgaagacgccatttataatttaagaaaatgaaagtgattgaatatataaccccatttgttggtgtcgtgtcagtgtgctagaaaccaaaatgtcgaata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27723830 atgaagacgccatttataatttaagaaaatgaaagtgattgaatatataaccccatttgttggtgtcgtgtcagtgtgctagaaaccaaaatgtcgaata 27723929  T
Q  116 ttggacacactttcaatataaagtgtcggtgctacaaagcttgcaagacattttgattttgattcaataaacagattttagtgttgataaccattatgta 215  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||     
T  27723930 ttggacacactttctatataaagtgtcggtgctacaaagtttgcaagacattttgattttgattcaataaacagattttagagttgataa-cattatgtg 27724028  T
Q  216 aatgtggatgtgaagaatgcatgataaatgagtatctatctatgatcagataacactgattcaaaattccatggat 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27724029 aatgtggatgtgaagaatgcatgataaatgagtatctatctatgatcaggtaacactgattcaaaattccatggat 27724104  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 50187310 - 50187342
Alignment:
Q  31 ataatttaagaaaatgaaagtgattgaatatat 63  Q
    ||||||||||||||| |||||||||||||||||    
T  50187310 ataatttaagaaaataaaagtgattgaatatat 50187342  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 62
Target Start/End: Original strand, 43434524 - 43434555
Alignment:
Q  31 ataatttaagaaaatgaaagtgattgaatata 62  Q
    ||||||||||||||||||||||||||||||||    
T  43434524 ataatttaagaaaatgaaagtgattgaatata 43434555  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 62
Target Start/End: Complemental strand, 23818018 - 23817987
Alignment:
Q  31 ataatttaagaaaatgaaagtgattgaatata 62  Q
    ||||||||||||||||||||||||||||||||    
T  23818018 ataatttaagaaaatgaaagtgattgaatata 23817987  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 19388931 - 19388964
Alignment:
Q  29 ttataatttaagaaaatgaaagtgattgaatata 62  Q
    |||||||||||| |||||||||||||||||||||    
T  19388931 ttataatttaaggaaatgaaagtgattgaatata 19388964  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 30585150 - 30585122
Alignment:
Q  31 ataatttaagaaaatgaaagtgattgaat 59  Q
    |||||||||||||||||||||||||||||    
T  30585150 ataatttaagaaaatgaaagtgattgaat 30585122  T

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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 34406440 - 34406468
Alignment:
Q  31 ataatttaagaaaatgaaagtgattgaat 59  Q
    |||||||||||||||||||||||||||||    
T  34406440 ataatttaagaaaatgaaagtgattgaat 34406468  T

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Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 5037227 - 5037259
Alignment:
Q  124 actttcaatataaagtgtcggtgctacaaagct 156  Q
    |||||||||||||||||||||||||||| ||||    
T  5037227 actttcaatataaagtgtcggtgctacatagct 5037259  T

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