View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15855_low_4 (Length: 529)
Name: NF15855_low_4
Description: NF15855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15855_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 41864348 - 41864624
Alignment:
| Q |
18 |
tacaatatatttaataattttggatgagttttatcaatggttacatcaatcatcaaaccaataaatgttaaaaattgcttgaagagcaagctgatatatc |
117 |
Q |
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| T |
41864348 |
tacaatatatttaataattttggatgagttttatcaatagttacatcaatcatcaacccaataaatgttaaac--tgcttgaagagcaagctgatatatc |
41864445 |
T |
|
| Q |
118 |
taagcgagttaataattgacttgaaagtcgcatcaaaggggaagaagaattatcacaaaagctacaataaactaatgtaaaacatgtaaggagaaaattc |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41864446 |
taagtgagttaataattgacttgaaagtcgcatcaaaggggaagaagaattatcacaaaagctacaatgaactaatgtaaaacatgtaaggagaaaattc |
41864545 |
T |
|
| Q |
218 |
ttgagaaaacaaaacaaaccgatgcaaagagaaagcacacagatatgaagagttaacattcatacgaagggttctttat |
296 |
Q |
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| T |
41864546 |
ttgagaaaacaaaacaaaccgatacaaacagaaagcacacagatatgaagagttaacattcatacgaagggttctttat |
41864624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 335 - 495
Target Start/End: Original strand, 41864690 - 41864850
Alignment:
| Q |
335 |
ctcaataaatgaactcaactatattgcttccaaaaggggatggttcaagttggtggctccaagcttgtgtttcttcgtaaacaaattattcaaacccact |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |
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| T |
41864690 |
ctcaataaatgaactcaactatattgcttccaaaaggggatggttcaagttggtggttccaagcttgtgtttcttcgtaaacaaattattcagcccctct |
41864789 |
T |
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| Q |
435 |
cttttttgtgctccttagccccgccattcaacttcatttgattccactttatgccattaat |
495 |
Q |
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| T |
41864790 |
cttttttgtgctccttagccccgccattcaacttcatttgtttccactttatgctattaat |
41864850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 488
Target Start/End: Complemental strand, 26451987 - 26451950
Alignment:
| Q |
451 |
agccccgccattcaacttcatttgattccactttatgc |
488 |
Q |
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| T |
26451987 |
agccccgccattcaacttcatttgattccactttatgc |
26451950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 13861358 - 13861395
Alignment:
| Q |
451 |
agccccgccattcaacttcatttgattccactttatgc |
488 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |
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| T |
13861358 |
agccccaccattcaacttcatttggttccactttatgc |
13861395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 52526654 - 52526691
Alignment:
| Q |
451 |
agccccgccattcaacttcatttgattccactttatgc |
488 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |
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| T |
52526654 |
agccccaccattcaacttcatttggttccactttatgc |
52526691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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