View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15855_low_5 (Length: 459)

Name: NF15855_low_5
Description: NF15855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15855_low_5
NF15855_low_5
[»] chr6 (4 HSPs)
chr6 (194-394)||(28550287-28550489)
chr6 (1-144)||(28550032-28550194)
chr6 (392-445)||(28550526-28550579)
chr6 (325-357)||(30874182-30874214)
[»] chr7 (1 HSPs)
chr7 (65-133)||(18573150-18573218)
[»] chr3 (1 HSPs)
chr3 (65-128)||(20000132-20000195)
[»] chr5 (1 HSPs)
chr5 (64-128)||(5539052-5539116)
[»] chr8 (2 HSPs)
chr8 (65-128)||(38810095-38810158)
chr8 (1-57)||(33933341-33933397)
[»] chr1 (4 HSPs)
chr1 (65-128)||(3400049-3400112)
chr1 (2-65)||(27121000-27121063)
chr1 (84-128)||(42606324-42606368)
chr1 (1-37)||(42606434-42606470)
[»] chr4 (5 HSPs)
chr4 (1-65)||(20634633-20634697)
chr4 (65-128)||(20634551-20634614)
chr4 (26-65)||(36010853-36010892)
chr4 (66-128)||(36010912-36010974)
chr4 (68-124)||(40287346-40287402)
[»] scaffold0001 (1 HSPs)
scaffold0001 (64-128)||(509624-509688)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 7e-90; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 194 - 394
Target Start/End: Original strand, 28550287 - 28550489
Alignment:
Q  194 tttccttggaatatgaatgttaatattaaatgtattttttgtctgatgtgtataaataaattattcttttagaatatataaatttatttttcaccattaa 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28550287 tttccttggaatatgaatgttaatattaaatgtattttttgtctgatgtgtataaataaattattcttttacaatatataaatttatttttcaccattaa 28550386  T
Q  294 accactaaatcacatcatgctttaatccaacggtaagacttattgattcaataataaaaataaacatacata--atgcaagatttatctcatttatgcat 391  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||  |||||||| |||||||||||||||||    
T  28550387 accactaaatcatatcatgctttgatccaacggtaagacttattgattcaataatgaaaataaacatatatatgatgcaagacttatctcatttatgcat 28550486  T
Q  392 cat 394  Q
    |||    
T  28550487 cat 28550489  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 28550032 - 28550194
Alignment:
Q  1 cacaacgttgtttggacaacaacttaagagagagctagtgatgttgacaatggagctcgcgtgac-------------------taagcaggtggagctc 81  Q
    |||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||    
T  28550032 cacagcgttgttttcacaacgacttaagagagagctagtgatgttgacaatggagctcgcgtgacctgaatgatcaagatggactaagcaggtggagctc 28550131  T
Q  82 aagtgacccggacgatcaagttgagttgttcatgttgaatagtcaatatattcgagaatacat 144  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28550132 aagtgacccggatgatcaagttgagttgttcatgttgaatagtccatatattcgagaatacat 28550194  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 28550526 - 28550579
Alignment:
Q  392 catgtttcttcccatgcatcatgattatgataataaaagaaataatgatgatgg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28550526 catgtttcttcccatgcatcatgattatgataataaaagaaataatgatgatgg 28550579  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 30874214 - 30874182
Alignment:
Q  325 ggtaagacttattgattcaataataaaaataaa 357  Q
    |||||||||||||||||||||| ||||||||||    
T  30874214 ggtaagacttattgattcaatagtaaaaataaa 30874182  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 18573218 - 18573150
Alignment:
Q  65 ctaagcaggtggagctcaagtgacccggacgatcaagttgagttgttcatgttgaatagtcaatatatt 133  Q
    |||||||||||||||||| |||||| | ||||||||| |||||||| ||||||||||||||||||||||    
T  18573218 ctaagcaggtggagctcacgtgacctgtacgatcaagctgagttgtacatgttgaatagtcaatatatt 18573150  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 20000195 - 20000132
Alignment:
Q  65 ctaagcaggtggagctcaagtgacccggacgatcaagttgagttgttcatgttgaatagtcaat 128  Q
    |||||||||||||||||| |||||| | |||||||||||||||||| |||||||||||||||||    
T  20000195 ctaagcaggtggagctcacgtgacctgaacgatcaagttgagttgtacatgttgaatagtcaat 20000132  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 5539052 - 5539116
Alignment:
Q  64 actaagcaggtggagctcaagtgacccggacgatcaagttgagttgttcatgttgaatagtcaat 128  Q
    |||||||||||| |||||| |||||| | | |||||||||||||||| |||||||||||||||||    
T  5539052 actaagcaggtgaagctcacgtgacctgaatgatcaagttgagttgtacatgttgaatagtcaat 5539116  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 38810095 - 38810158
Alignment:
Q  65 ctaagcaggtggagctcaagtgacccggacgatcaagttgagttgttcatgttgaatagtcaat 128  Q
    |||||||| ||||||||| |||||| | |||||||||||||| ||| |||||||||||||||||    
T  38810095 ctaagcagatggagctcacgtgacctgaacgatcaagttgagctgtacatgttgaatagtcaat 38810158  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33933341 - 33933397
Alignment:
Q  1 cacaacgttgtttggacaacaacttaagagagagctagtgatgttgacaatggagct 57  Q
    ||||| |||| |||||||||||| | ||||||||||||||||||||| | |||||||    
T  33933341 cacaatgttgcttggacaacaacctgagagagagctagtgatgttgaaagtggagct 33933397  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 3400112 - 3400049
Alignment:
Q  65 ctaagcaggtggagctcaagtgacccggacgatcaagttgagttgttcatgttgaatagtcaat 128  Q
    |||||||||||||||||| |||||| | ||||||||| | |||||| |||||||||||||||||    
T  3400112 ctaagcaggtggagctcacgtgacctgaacgatcaagctaagttgtacatgttgaatagtcaat 3400049  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 27121063 - 27121000
Alignment:
Q  2 acaacgttgtttggacaacaacttaagagagagctagtgatgttgacaatggagctcgcgtgac 65  Q
    |||||||||||||||||| ||| |   |||||||||||||||||||||||||||||| ||||||    
T  27121063 acaacgttgtttggacaataacctgctagagagctagtgatgttgacaatggagctcacgtgac 27121000  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 42606368 - 42606324
Alignment:
Q  84 gtgacccggacgatcaagttgagttgttcatgttgaatagtcaat 128  Q
    |||||| | |||||||||||||||||| ||| |||||||||||||    
T  42606368 gtgacctgaacgatcaagttgagttgtacatattgaatagtcaat 42606324  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42606470 - 42606434
Alignment:
Q  1 cacaacgttgtttggacaacaacttaagagagagcta 37  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  42606470 cacaatgttgtttggacaacgacttaagagagagcta 42606434  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20634697 - 20634633
Alignment:
Q  1 cacaacgttgtttggacaacaacttaagagagagctagtgatgttgacaatggagctcgcgtgac 65  Q
    ||||| |||| |||||||||||||| ||||||||||||||||||||| |  ||||||| ||||||    
T  20634697 cacaaggttgcttggacaacaacttgagagagagctagtgatgttgaaagaggagctcacgtgac 20634633  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 20634614 - 20634551
Alignment:
Q  65 ctaagcaggtggagctcaagtgacccggacgatcaagttgagttgttcatgttgaatagtcaat 128  Q
    |||||||||||||||||| |||||| | ||||||||  |||||||| ||||||||||| |||||    
T  20634614 ctaagcaggtggagctcacgtgacctgaacgatcaaactgagttgtacatgttgaatattcaat 20634551  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 36010853 - 36010892
Alignment:
Q  26 aagagagagctagtgatgttgacaatggagctcgcgtgac 65  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  36010853 aagagagagctagtgatgttgacaatgaagctcacgtgac 36010892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 36010912 - 36010974
Alignment:
Q  66 taagcaggtggagctcaagtgacccggacgatcaagttgagttgttcatgttgaatagtcaat 128  Q
    ||||||||||||| ||| ||||||   ||||||||||| || ||| |||||||||||||||||    
T  36010912 taagcaggtggagttcacgtgacctaaacgatcaagttaagctgtacatgttgaatagtcaat 36010974  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 40287346 - 40287402
Alignment:
Q  68 agcaggtggagctcaagtgacccggacgatcaagttgagttgttcatgttgaatagt 124  Q
    ||||||||||||||| |||||| | | ||||||  |||||||| |||||||||||||    
T  40287346 agcaggtggagctcacgtgacctgaatgatcaaactgagttgtacatgttgaatagt 40287402  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 509688 - 509624
Alignment:
Q  64 actaagcaggtggagctcaagtgacccggacgatcaagttgagttgttcatgttgaatagtcaat 128  Q
    ||||||||||||||||||| |||||| | ||||| |||||||   ||  ||||||||||||||||    
T  509688 actaagcaggtggagctcacgtgacctgaacgattaagttgaaccgtatatgttgaatagtcaat 509624  T

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