View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15855_low_8 (Length: 323)
Name: NF15855_low_8
Description: NF15855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15855_low_8 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 10337 - 10031
Alignment:
| Q |
20 |
ttcaaggctgtctttttcctctacattaggacttttcgggttgaatcctttaacaaagatgtcaaaattgtatg-----ttggtttggtgaattggctct |
114 |
Q |
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|||||||||||||||| ||||||||||| | || ||||||||| |||||||||| ||||| |||||||||| |||||||||| |||| ||||| |
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| T |
10337 |
ttcaaggctgtcttttccctctacattaagctcatttgggttgaatgctttaacaaaaatgtccaaattgtatgctggtttggtttggtcaattagctct |
10238 |
T |
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| Q |
115 |
agcacgggtgcgaataattgaactagattgcaagatagtggtggaaggtattgttga-------taacactaacaactggtcagaatttggtcataccct |
207 |
Q |
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| T |
10237 |
aacaagggtg-gaa--attgaactagattgcaagctactagtgaaaggtattattgaatattgataacacaaacaactggtcagaatttggctataccat |
10141 |
T |
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| Q |
208 |
a----tctaattatagatcacttcttaatcatttttcaaactttaagataag-ttttgctaggagacaaataaattttgtcgctcgtacttttttaagga |
302 |
Q |
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| T |
10140 |
ggatgtctaattataaatcgcttcttagtcatttttcaaactttaagataagtttttgctaggagataaagaaatttcatcgctcatacttttttaagga |
10041 |
T |
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| Q |
303 |
tgtcagaatt |
312 |
Q |
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||||| |||| |
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| T |
10040 |
tgtcaaaatt |
10031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 21188667 - 21188708
Alignment:
| Q |
271 |
aataaattttgtcgctcgtacttttttaaggatgtcagaatt |
312 |
Q |
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| T |
21188667 |
aataaattttgtcgctcgtacttttttaaggatgtcagaatt |
21188708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 1101088 - 1101034
Alignment:
| Q |
240 |
caaactttaagataagttttgctaggagacaaataaattttgtcgctcgtacttt |
294 |
Q |
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| T |
1101088 |
caaactttaagaaaagttttgctaggagacaatcaaattttgtcgctcatacttt |
1101034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 2704100 - 2704023
Alignment:
| Q |
217 |
tagatcacttcttaatcatttttcaaactttaagataagttttgctaggagacaaataaattttgtcgctcgtacttt |
294 |
Q |
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| T |
2704100 |
tagatcacttttaaatcaatttagaaactttaagataagttttgttaggagacaagcaaattatgtcgctcatacttt |
2704023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 8178167 - 8178102
Alignment:
| Q |
217 |
tagatcacttcttaatcatttttcaaactttaagataagttttgctaggagacaaataaattttgt |
282 |
Q |
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| T |
8178167 |
tagatcacttttaactcatttcccaaactttaagataagttttgctaggagacaagcaaattttgt |
8178102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 10486609 - 10486560
Alignment:
| Q |
236 |
ttttcaaactttaagataagttttgctaggagacaaataaattttgtcgc |
285 |
Q |
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| T |
10486609 |
ttttcaaactttaagataagttttgttaggagacaagcaaattatgtcgc |
10486560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 4318837 - 4318790
Alignment:
| Q |
240 |
caaactttaagataagttttgctaggagacaaataaattttgtcgctc |
287 |
Q |
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| T |
4318837 |
caaactttaagataagttttgttaggagacaagtaaatgttgtcgctc |
4318790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 19023387 - 19023345
Alignment:
| Q |
236 |
ttttcaaactttaagataagttttgctaggagacaaataaatt |
278 |
Q |
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| T |
19023387 |
ttttcaaactttaagataagttttgttaggagacaaacaaatt |
19023345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 15223 - 15270
Alignment:
| Q |
240 |
caaactttaagataagttttgctaggagacaaataaattttgtcgctc |
287 |
Q |
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| T |
15223 |
caaactttaagataagttttgttaggagacaagctaattttgtcgctc |
15270 |
T |
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