View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15855_low_9 (Length: 295)
Name: NF15855_low_9
Description: NF15855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15855_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 35229489 - 35229753
Alignment:
| Q |
16 |
cacatgctacacctaataatcataataacattacacatttacatacaaattacaaaatacaacacttgaaatttagtttagaagaaaacaaggaaaaaga |
115 |
Q |
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| T |
35229489 |
cacatgctacacctaataatcataataacattacacatttacatacaaattacaaaatacaacacttgaaattttg-----aagaaaacaaggaaaaaga |
35229583 |
T |
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| Q |
116 |
aaaggatgatgatgaaatgaagcccacaaacatgtcttgattgatcacgaaccgtttgattcgattacttagacttgaagggaatggctctgattacaac |
215 |
Q |
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| T |
35229584 |
aaaggatgatgatgaaatgaagcccacaaacatgtcttgattgatcacgaaccgtttgattcgattacttagacttgaagggaatggctctgattacaac |
35229683 |
T |
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| Q |
216 |
cacgtggtagagtgctgcaagagctgctccaataaatggtcccacccagaagatccactgcaagaataat |
285 |
Q |
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| T |
35229684 |
cacgtggtagagtgctgcaagagctgctccaataaatggtcccacccagaagatccactgcaagaataat |
35229753 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 31459302 - 31459392
Alignment:
| Q |
187 |
gacttgaagggaatggctctgattacaaccacgtggtagagtgctgcaagagctgctccaataaatggtcccacccagaagatccactgca |
277 |
Q |
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| T |
31459302 |
gacttgaaaggaatggctctgatcacaactgtgtggtaaagagctgcaagtgctgcaccaatgaatggtccaacccagaaaatccactgca |
31459392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 41038099 - 41038053
Alignment:
| Q |
232 |
gcaagagctgctccaataaatggtcccacccagaagatccactgcaa |
278 |
Q |
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| T |
41038099 |
gcaagagcagctccaataaatggtccaacccagaatatccactgcaa |
41038053 |
T |
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