View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15856_high_1 (Length: 665)
Name: NF15856_high_1
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 15 - 501
Target Start/End: Original strand, 4453364 - 4453850
Alignment:
| Q |
15 |
aaatttcacatataacatcgtacctactaggtagtttccactccttgctaccattatttgtataaatactcaatattaaatagtgttctataactttcta |
114 |
Q |
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| T |
4453364 |
aaatttcacatataacatcgtacctactaggtagtttccactccttgctaccattatttgtataaatactcaatattaaatagtgttctataactttcta |
4453463 |
T |
|
| Q |
115 |
aggcttctattatcattggttgattctagatatctccactcattcattaaactcaatcactgaaaatggatttaaggggtagtccaccatacatggtagt |
214 |
Q |
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| T |
4453464 |
aggcttctattatcattggttgattctagatatctccactcattcattaaactcaatcactgaaaatggatttaaggggtagtccaccatacatggtagt |
4453563 |
T |
|
| Q |
215 |
gtttacattatcattcatgttgatcatcagccatacgatgggagaatcagcacaagagaaacaaaaatgtgcagaacagctcacagaccttacaacatgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4453564 |
gtttacattatcattcatgttgatcatcagccatacgatgggagaatcagcacaagagaaacaaaaatgtgcagaacaactcacagaccttacaacatgt |
4453663 |
T |
|
| Q |
315 |
cttccatatcttggtggaagtgccaactcacctacatcagattgttgcagtggtctcatacaatccaccaagaacaacaagagatgcatatgcattatta |
414 |
Q |
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| T |
4453664 |
cttccatatcttggtggaagtgccaactcacctacatcagattgttgcagtggtctcatacaatccaccaagaacaacaagaaatgcatatgcattatta |
4453763 |
T |
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| Q |
415 |
ttaaagacagagatgaccctgacctaggtttaaagattaacattactcttgctcttggacttccttctctttgcaatacaccagata |
501 |
Q |
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| T |
4453764 |
ttaaagacagagatgaccctgacctaggtttaaagattaacattactcttgctcttggacttccttctctttgcaatacaccagata |
4453850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 567 - 657
Target Start/End: Original strand, 4453916 - 4454006
Alignment:
| Q |
567 |
atcaaagaatttaaatagtgccgtgccatggtacgtacatttcctatataatggtcaacataccctgtcttgaaattgccttcttctctct |
657 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4453916 |
atcaaagaatttaaatagtgccgtgccatggtacgtacatttcctatataatggtcaacataccctgtcttgaaattgccttcttttctct |
4454006 |
T |
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