View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15856_high_17 (Length: 306)

Name: NF15856_high_17
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15856_high_17
NF15856_high_17
[»] chr1 (17 HSPs)
chr1 (2-288)||(17700130-17700422)
chr1 (2-288)||(17663557-17663850)
chr1 (9-288)||(21898915-21899215)
chr1 (9-123)||(22663447-22663561)
chr1 (14-115)||(38226787-38226888)
chr1 (203-288)||(38226967-38227052)
chr1 (9-124)||(27777752-27777867)
chr1 (9-116)||(27782092-27782199)
chr1 (192-288)||(22663640-22663739)
chr1 (203-260)||(27777597-27777654)
chr1 (203-260)||(27782307-27782364)
chr1 (227-288)||(38227135-38227196)
chr1 (227-282)||(27781023-27781078)
chr1 (213-283)||(38227049-38227119)
chr1 (227-288)||(27777500-27777561)
chr1 (227-260)||(27781084-27781117)
chr1 (227-288)||(27782400-27782461)
[»] chr4 (7 HSPs)
chr4 (194-288)||(51220001-51220095)
chr4 (203-277)||(35250154-35250228)
chr4 (194-288)||(51220788-51220882)
chr4 (9-125)||(35249931-35250047)
chr4 (207-260)||(51220484-51220537)
chr4 (218-253)||(35250268-35250303)
chr4 (164-247)||(51219687-51219772)
[»] chr7 (2 HSPs)
chr7 (197-283)||(440898-440984)
chr7 (164-241)||(440761-440839)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 288
Target Start/End: Original strand, 17700130 - 17700422
Alignment:
Q  2 tttagaatcacacaaacaaaattagaagattaagacaaacacaaaaggtgggaatagataatctaaattttatatatatcgtgtcagcaaactgttcaat 101  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  17700130 tttagattcacacaaacaaaattagaagattaagacaaccacaaaaggtggaaattgataatctaaaatttatatatatcgtgtcagcaaactgttcaat 17700229  T
Q  102 aatcgatgatgatattataactaaggaaaattagatgacagcatcgacggtatctcacacattcataatatcattcttcataaaaagaa--tataaa--- 196  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||       
T  17700230 aatcgacgatgatattataactaaggaaaattagatgacagcatcgacggtatctcacacattcataatatcattcttcataaaaaaaaaatataaacag 17700329  T
Q  197 -aaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattcggttt 288  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  17700330 aaaagaaacactaattgttttcatcttcaaaatcatcacttggaagctcattcaaatcaacattcctgacaactcttgaccctaattcggttt 17700422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 288
Target Start/End: Complemental strand, 17663850 - 17663557
Alignment:
Q  2 tttagaatcacacaaacaaaattagaagattaagacaaacacaaaaggtgggaatagataatctaaattttatatatatc-gtgtcagcaaactgttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||  || ||||||||||||||||    
T  17663850 tttagaatcacacaaacaaaattagaagattaagacaaacacaaaaggtggaaattgaaaatctaaaatttatatatatatgtctcagcaaactgttcaa 17663751  T
Q  101 taatcgatgatgatattataactaaggaaaattagatgacagcatcgacggtatctcacacattcataatatcattcttcataaaaagaa--tataaa-- 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||||||      
T  17663750 taatcgatgatgatattataactaaggaaaattagatgacagcatccacggtatctcacacattcataatatcattcttcataaaaaaaaaatataaaca 17663651  T
Q  197 --aaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattcggttt 288  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17663650 taaaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcctgacaactcttgaccctaattcggttt 17663557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 21898915 - 21899215
Alignment:
Q  9 tcacacaaacaaaattagaagattaagacaaacacaaaaggtgggaatagataatctaaattttatatatatcgtgtcagcaaactgttcaataatcgat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||| |||||||| ||||||||||||||||||||||||||| ||    
T  21898915 tcacacaaacaaaattagaagattaagacaaacacaaaaggtggaaattgataa-ccaaaatttatataaatcgtgtcagcaaactgttcaataatccat 21899013  T
Q  109 gatgatattataac------------------taaggaaaattagatgacagcatcgacggtatctcacacattcataatatcattcttcataaaaagaa 190  Q
     |||||||||||||                  |||||||||| | ||||||  ||| | | |||| |||||| | ||||| |  ||||||||||||   |    
T  21899014 aatgatattataacaaaaaaaaaaagtctcaataaggaaaatcacatgacaaaatcaaggttatcccacacaataataatgttgttcttcataaaagaga 21899113  T
Q  191 tat----aaaaaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattcggt 286  Q
    |||    |||| ||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||     |||||||||||||||||||||    
T  21899114 tataaacaaaagagagacactaattggtttcatcttcaaaatcgtcacttgaaatctcattcaaatcaaaattcatagaaactcttgaccctaattcggt 21899213  T
Q  287 tt 288  Q
    ||    
T  21899214 tt 21899215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 22663447 - 22663561
Alignment:
Q  9 tcacacaaacaaaattagaagattaagacaaacacaaaaggtgggaatagataatctaaattttatatatatcgtgtcagcaaactgttcaataatcgat 108  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||  || |||||||  ||| | ||||||| | ||||||| ||    
T  22663447 tcacacaaacaaaattagaagattaacacaaacacaaaaggtggaaatggataacctaaaaattttatatattctgtaaacaaactgctaaataatccat 22663546  T
Q  109 gatgatattataact 123  Q
     || |||||||||||    
T  22663547 aataatattataact 22663561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 38226787 - 38226888
Alignment:
Q  14 caaacaaaattagaagattaagacaaacacaaaaggtgggaatagataatctaaattttatatatatcgtgtcagcaaactgttcaataatcgatgatga 113  Q
    |||||||||||||||||||||||||||   ||||||||  ||| ||||| ||||| |||||||||||| ||| |||||| || ||||||||  |||||||    
T  38226787 caaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatga 38226886  T
Q  114 ta 115  Q
    ||    
T  38226887 ta 38226888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 38226967 - 38227052
Alignment:
Q  203 acactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattcggttt 288  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||   |||||| |||||||| |||| ||||    
T  38226967 acactaattggttttatcttcaaactcatcacttggaagctcgttcaaatctaaattcttcacaacttttgaccctgattcagttt 38227052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 27777867 - 27777752
Alignment:
Q  9 tcacacaaacaaaattagaagattaagacaaacacaaaaggtgggaatagataatctaaattttatatatatcgtgtcagcaaactgttcaataatcgat 108  Q
    |||| |||||||||  ||||||||||||||||   ||||| ||| ||| ||||| ||||| |||||||||||| ||| |||||| || ||||||||  ||    
T  27777867 tcactcaaacaaaacaagaagattaagacaaatgtaaaagatggaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcat 27777768  T
Q  109 gatgatattataacta 124  Q
    ||||||||| ||||||    
T  27777767 gatgatattttaacta 27777752  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 27782092 - 27782199
Alignment:
Q  9 tcacacaaacaaaattagaagattaagacaaacacaaaaggtgggaatagataatctaaattttatatatatcgtgtcagcaaactgttcaataatcgat 108  Q
    |||| ||||||||| |||||||||||||||||   ||||||||| ||| ||||| ||||| |||||||||||| ||| ||| || || ||||||||  ||    
T  27782092 tcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcgaattgctcaataattcat 27782191  T
Q  109 gatgatat 116  Q
    ||||||||    
T  27782192 gatgatat 27782199  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 22663640 - 22663739
Alignment:
Q  192 ataaaaaagaaacactaattggtttcatcttcaaaa---tcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattcggttt 288  Q
    |||||||||| |||||||||||||||| | | ||||   |||||||||| ||| |||||||||||||| |||   ||||||| |||||||||||||||||    
T  22663640 ataaaaaagagacactaattggtttcaacataaaaactatcatcacttgaaagttcattcaaatcaaacttcaaaacaactcctgaccctaattcggttt 22663739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 27777654 - 27777597
Alignment:
Q  203 acactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattc 260  Q
    |||||||||||||||||||||| |||||||||||| || ||| |||||||| ||||||    
T  27777654 acactaattggtttcatcttcacaatcatcacttgtaaactcgttcaaatctaaattc 27777597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 27782307 - 27782364
Alignment:
Q  203 acactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattc 260  Q
    |||||||||||||||||||||| |||||||||||| || ||| |||||||| ||||||    
T  27782307 acactaattggtttcatcttcacaatcatcacttgaaaactcgttcaaatctaaattc 27782364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 38227135 - 38227196
Alignment:
Q  227 atcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattcggttt 288  Q
    |||||||||||||||||| |||||||||| ||||   |||||| ||||||||||||| ||||    
T  38227135 atcatcacttggaagctcgttcaaatcaacattcttaacaacttttgaccctaattcagttt 38227196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 27781078 - 27781023
Alignment:
Q  227 atcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaatt 282  Q
    |||||||||||||||||| | |||||||||||||   |||||| ||||||||||||    
T  27781078 atcatcacttggaagctcgtccaaatcaaaattcttcacaacttttgaccctaatt 27781023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 38227049 - 38227119
Alignment:
Q  213 gtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattc 283  Q
    |||||| |||||  ||||||||||||||| || |||||||||||||||   ||| || |||||||||||||    
T  38227049 gtttcaccttcattatcatcacttggaagttcgttcaaatcaaaattcttcacatcttttgaccctaattc 38227119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 27777561 - 27777500
Alignment:
Q  227 atcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattcggttt 288  Q
    ||||| |||||||||||| |||||||||||||||   |||||| ||||||||| ||| ||||    
T  27777561 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgttt 27777500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 27781117 - 27781084
Alignment:
Q  227 atcatcacttggaagctcattcaaatcaaaattc 260  Q
    |||||||||||||||||| |||||||||||||||    
T  27781117 atcatcacttggaagctcgttcaaatcaaaattc 27781084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 27782400 - 27782461
Alignment:
Q  227 atcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattcggttt 288  Q
    ||||| |||||||||||| |||||||||||||||   |||||| ||||||||| ||| ||||    
T  27782400 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgttt 27782461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 51220001 - 51220095
Alignment:
Q  194 aaaaaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattcggttt 288  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||| ||||||||||||| ||||    
T  51220001 aaaaaagagacactaattggtttcatcttcaaaatcatcacttggaagctcattcgaatcaaaattcataacaactattgaccctaattcagttt 51220095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 35250154 - 35250228
Alignment:
Q  203 acactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccc 277  Q
    ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||   |||||| |||||||    
T  35250154 acactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaatcaaaattcttcacaacttttgaccc 35250228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 51220788 - 51220882
Alignment:
Q  194 aaaaaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattcggttt 288  Q
    |||||| | |||||| |||||||||||||||||| |||||||||||||||| ||||| |||||||||   |||| | ||||||||||||| ||||    
T  51220788 aaaaaaaagacactagttggtttcatcttcaaaaccatcacttggaagctcgttcaattcaaaattcataacaattattgaccctaattcagttt 51220882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 35249931 - 35250047
Alignment:
Q  9 tcacacaaacaaaattagaagattaagacaaacacaaaaggtgggaatagataatctaaattttatatatatcgtgtcagcaaactgttcaataatcgat 108  Q
    |||| ||||||||||||||||| |||||||||   |||||||   ||| ||||||||||| | |||||||||  ||| |||||| || ||||||||  ||    
T  35249931 tcactcaaacaaaattagaagactaagacaaatgtaaaaggtaataattgataatctaaactctatatatatgttgtaagcaaattgctcaataattcat 35250030  T
Q  109 gatgatattataactaa 125  Q
    ||||||||| |||||||    
T  35250031 gatgatattttaactaa 35250047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 51220537 - 51220484
Alignment:
Q  207 taattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattc 260  Q
    ||||||||||||| ||||||| ||||||||||||| ||||| |||||| |||||    
T  51220537 taattggtttcatattcaaaagcatcacttggaagatcattaaaatcataattc 51220484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 35250268 - 35250303
Alignment:
Q  218 atcttcaaaatcatcacttggaagctcattcaaatc 253  Q
    ||||||||||||||||||||||||||| ||||||||    
T  35250268 atcttcaaaatcatcacttggaagctcgttcaaatc 35250303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 51219772 - 51219687
Alignment:
Q  164 tcataatatcattcttcataaaaagaatata--aaaaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcatt 247  Q
    |||||||||||||| | |||||||  ||| |  ||||| | || |||| ||||||||| ||||||| |||||||||||||||||||    
T  51219772 tcataatatcattcctaataaaaaatataaactaaaaaaagacgctaaatggtttcatattcaaaaacatcacttggaagctcatt 51219687  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 440898 - 440984
Alignment:
Q  197 aaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcccgacaactcttgaccctaattc 283  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||   |||||| ||| |||||||||    
T  440898 aaagagacactaattagtttcatcttcaaagtcatcacttggaagctcgttcaaatcaaaattcttcacaacttttggccctaattc 440984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 440761 - 440839
Alignment:
Q  164 tcataatatcattcttcataaaaagaatataaaaaagaaa--cactaattggtttcatcttcaaaatcatcacttggaag 241  Q
    ||||||||||||||||||||| || | ||||||||| | |  ||||  ||||||||||||||||||||||||||||||||    
T  440761 tcataatatcattcttcataagaaaactataaaaaaaatagacactg-ttggtttcatcttcaaaatcatcacttggaag 440839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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