View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15856_high_22 (Length: 259)
Name: NF15856_high_22
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 238556 - 238342
Alignment:
| Q |
18 |
atatacacacttcctaagagtaagtaattaaaaattacttagaaaggatcttcacaataaattatttattgcaaactggctcccatgagaaaatgtacgt |
117 |
Q |
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| T |
238556 |
atatacacacttcctaagagtaagtaattaaaaattacttagaaaggatcttcacaataaattatttattgcaaactggctcccatgagaaaatgtaagt |
238457 |
T |
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| Q |
118 |
acgtcagggtggaatcagcattaatacactttaattaatatttctatattcttcaccataggatgatgcatttcaacattcatgcaaattaaacttgata |
217 |
Q |
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| T |
238456 |
acgtcagggtggaatcagcattaatacactttaattaatatttctatattcttcaccataggatgatgcatttcaacattcatgcaaattaaacttgtta |
238357 |
T |
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| Q |
218 |
gctttcttactttgg |
232 |
Q |
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|| |||||||||||| |
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| T |
238356 |
gccttcttactttgg |
238342 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 22677343 - 22677291
Alignment:
| Q |
130 |
aatcagcattaatacactttaattaatatttctatattcttcaccataggatg |
182 |
Q |
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||||||||||| | |||||||||||||||| |||||| |||| ||||||||| |
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| T |
22677343 |
aatcagcattatcatactttaattaatatttttatatttttcatcataggatg |
22677291 |
T |
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