View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15856_high_3 (Length: 477)

Name: NF15856_high_3
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15856_high_3
NF15856_high_3
[»] chr4 (2 HSPs)
chr4 (1-459)||(9925498-9925972)
chr4 (66-129)||(10390067-10390130)
[»] chr8 (2 HSPs)
chr8 (44-194)||(12268385-12268536)
chr8 (96-194)||(7754720-7754819)
[»] chr7 (2 HSPs)
chr7 (97-152)||(28106120-28106176)
chr7 (131-163)||(36438145-36438177)
[»] chr5 (2 HSPs)
chr5 (85-192)||(4177647-4177755)
chr5 (110-154)||(13288915-13288959)
[»] chr1 (3 HSPs)
chr1 (79-156)||(8115716-8115794)
chr1 (1-49)||(8115623-8115671)
chr1 (85-135)||(50371627-50371677)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 9925498 - 9925972
Alignment:
Q  1 taattttgttatatattgaaagttgaatgttgacaaatttaggtatatg-------------cctcctaaatttttaggttctgcatttatttcagcctt 87  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||             |||||||||||||||||||||  |||| |||||| |||    
T  9925498 taattttgttatatgttgaacgttgaatgttgacaaatttaggtatatgtcgttaatatatgcctcctaaatttttaggttctaaatttttttcagtctt 9925597  T
Q  88 cctttatacctcctaaattgcgtcttaggattagaaagttttaaaa---aattgcatttttattttactgagacctattatactttaagagtcgagcctt 184  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9925598 cctctatacctcctaaattgcgtcttaggattagaaagttttaaaaaaaaattgcatttttattttactgagacctattatactttaagagttgagcctt 9925697  T
Q  185 ttatttcataagaatcgcgttgatttatgttaagacttacctccattaaaaaaggatgatatttgtcacaacaaataccttataaatttcctcaaaaata 284  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||    
T  9925698 ttatttcataagaaccgcgttgatttatgttaagactttcctccattaaaaaaggatgttatgtgtcacaacaaataccttacaaatttcatcaaaaata 9925797  T
Q  285 agaaaaatctcactgatttgcgtatccaa-aaattgctcgacaaagataaatcattgttaagggtggtagatattggtatttacatggttagaagaaaaa 383  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||    
T  9925798 agaaaaatctcactgatttgcgtatccaacaaattgctcgacaaagataaatcattgtt-agggttgtagatattggaatttacatggttagaagtaaaa 9925896  T
Q  384 atatccaaaacaaattaattgttatcttttatgttatattccagagtatagcttcacctttcatgtaagatgtaat 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  9925897 atatccaaaacaaattaactgttatcttttatgttatattccagagtatagtttcacctttcacgtaagatgtaat 9925972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 10390067 - 10390130
Alignment:
Q  66 gttctgcatttatttcagccttcctttatacctcctaaattgcgtcttaggattagaaagtttt 129  Q
    |||||||||||  || || |||||| ||| ||||||||||||| ||||||||||||||| ||||    
T  10390067 gttctgcattttattaagtcttcctctatgcctcctaaattgcctcttaggattagaaattttt 10390130  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 12268536 - 12268385
Alignment:
Q  44 tatatgcctcctaaatttttaggttctgcatttatttc-agccttcctttatacctcctaaattgcgtcttaggattagaaagttttaaaaaattgcatt 142  Q
    ||||||||||||||||||| | |||||  |||| |||  || |||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||    
T  12268536 tatatgcctcctaaatttt-atgttctaaatttttttttagtcttcctttatgcctcttaaattgcctcttaggattaaaaagttttaaaaaattgcatt 12268438  T
Q  143 tttattttactga-gacctattatactttaagagtcgagccttttatttcata 194  Q
    |||| |||||||| |  ||||| |||| | ||||||||||||  |||||||||    
T  12268437 tttaatttactgagggtctattttactatgagagtcgagcctcctatttcata 12268385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 7754819 - 7754720
Alignment:
Q  96 cctcctaaattgcgtcttaggattagaaagttttaaaaaattgcatttttattttact-gagacctattatactttaagagtcgagccttttatttcata 194  Q
    |||| |||||||| ||||||||||||||||||| |||||||||| |||||||||||||  ||| |||||||| | | |||||||||| |  |||||||||    
T  7754819 cctcttaaattgcctcttaggattagaaagtttaaaaaaattgcgtttttattttactaaagatctattatattattagagtcgagcatcctatttcata 7754720  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 28106120 - 28106176
Alignment:
Q  97 ctcctaaattgcgtcttaggattagaaagtttt-aaaaaattgcatttttattttac 152  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  28106120 ctcctaaattgcttcttaggattagaaagttttaaaaaaattacatttttattttac 28106176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 36438177 - 36438145
Alignment:
Q  131 aaaaattgcatttttattttactgagacctatt 163  Q
    |||||||||||||||||||||||||| ||||||    
T  36438177 aaaaattgcatttttattttactgaggcctatt 36438145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 4177647 - 4177755
Alignment:
Q  85 cttcctttatacctcctaaattgcgtcttaggattagaaag-ttttaaaaaattgcatttttattttactgagacctattatactttaagagtcgagcct 183  Q
    |||||||||| ||||||||||||| || |||||||  |||| ||||||||||||| |||||||||||| || |  ||||| |||| | ||||||||||||    
T  4177647 cttcctttatgcctcctaaattgcctcataggattttaaagtttttaaaaaattgtatttttattttaatggggtctattttactatgagagtcgagcct 4177746  T
Q  184 tttatttca 192  Q
      |||||||    
T  4177747 cctatttca 4177755  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 13288915 - 13288959
Alignment:
Q  110 tcttaggattagaaagttttaaaaaattgcatttttattttactg 154  Q
    ||||||||||| |||||||||||||||| | ||||||||||||||    
T  13288915 tcttaggattaaaaagttttaaaaaattacgtttttattttactg 13288959  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 8115716 - 8115794
Alignment:
Q  79 ttcagccttcctttatacctcctaaattgcgtcttaggattagaaagttt-taaaaaattgcatttttattttactgag 156  Q
    ||||| |||||| ||| ||| ||||||||| ||||| |||||||||||||  |||||||||| ||||||||||||||||    
T  8115716 ttcagtcttcctctatgccttctaaattgcttcttacgattagaaagtttaaaaaaaattgcgtttttattttactgag 8115794  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8115623 - 8115671
Alignment:
Q  1 taattttgttatatattgaaagttgaatgttgacaaatttaggtatatg 49  Q
    |||||||||||||| ||| | ||||||||||||||||||| ||||||||    
T  8115623 taattttgttatatgttggacgttgaatgttgacaaattttggtatatg 8115671  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 50371627 - 50371677
Alignment:
Q  85 cttcctttatacctcctaaattgcgtcttaggattagaaagttttaaaaaa 135  Q
    |||||| ||| ||||||||||||| || || ||||||||||||||||||||    
T  50371627 cttcctctatgcctcctaaattgcctcctaagattagaaagttttaaaaaa 50371677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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