View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15856_low_10 (Length: 405)
Name: NF15856_low_10
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 43618414 - 43618792
Alignment:
| Q |
1 |
aaacgagtcaaagtaaaataatacttcaattgataataagagtgttttttctttgacgtttataataagagtgttaattatatatatgggatccaattaa |
100 |
Q |
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| T |
43618414 |
aaacgagtcaaagtaaaataatacttcaattgataataagagtgttttttctttgaggtttataataagagtgttaattatatatatgggatccaattaa |
43618513 |
T |
|
| Q |
101 |
acttataagggcaatgtaaataataacctctaactactgtaactaannnnnnnngtgtctctaatacatcttcatgttttttgttctctctctaatatat |
200 |
Q |
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| T |
43618514 |
acttataagggcaatgtaaataataacctctaactactgtaactaattttttttgtgtcactaatacattttcatgttttttgttctctctctaatatat |
43618613 |
T |
|
| Q |
201 |
atacacacactcactaagttnnnnnnnttggtgtcccttaaaaaatagggggccttattcggccgaacatcctcaggagcttccccgatcca-------- |
292 |
Q |
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| T |
43618614 |
at--acacactcactaaagttaaaaaattggtgtcccttaaaaaataaggggccttattcggccgaacatcctcaggagcttccccgatccactacatgt |
43618711 |
T |
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| Q |
293 |
--------------ctcatgtgagatttctgtccggtggaatctcctccactcatgttatgtttacaatatgcaggtccaa |
359 |
Q |
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| T |
43618712 |
tgggaggagattgtctcatgtgagatttatgtccggtggaatctcctccactcatgttatgtttacaatatgcaggtccaa |
43618792 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 12623099 - 12623052
Alignment:
| Q |
313 |
ggtggaatctcctccactcatgttatgtttacaatatgcaggtccaat |
360 |
Q |
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| T |
12623099 |
ggtgaaatctcctccactcatgttatgtttacaatatgcaagtccaat |
12623052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 36137410 - 36137459
Alignment:
| Q |
314 |
gtggaatctcctccactcatgttatgtttacaatatgcaggtccaattat |
363 |
Q |
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| T |
36137410 |
gtggaatctcctccactcacgtaacatttacaatatgcatgtccaattat |
36137459 |
T |
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